miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 56297 0.81 0.136
Target:  5'- gUCAUGCgGCCGCUgcucgagaucucGCAGGAGCGCu- -3'
miRNA:   3'- aAGUACGgCGGCGA------------UGUCCUCGUGcg -5'
25886 5' -57.4 NC_005337.1 + 5423 0.71 0.498428
Target:  5'- gUUcgGCCGUgGUcagGCagAGGAGCACGCg -3'
miRNA:   3'- aAGuaCGGCGgCGa--UG--UCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 88257 0.71 0.518123
Target:  5'- -gCGUGCCGgCGCgccgGCGGGcGC-CGCg -3'
miRNA:   3'- aaGUACGGCgGCGa---UGUCCuCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 8867 0.66 0.817693
Target:  5'- ----cGCCGCCG-UGCAuGAcgGCACGCa -3'
miRNA:   3'- aaguaCGGCGGCgAUGUcCU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 114110 0.74 0.363586
Target:  5'- cUUCGUGgccuCCGCCGCggccugcgGCAgcguGGAGCGCGCc -3'
miRNA:   3'- -AAGUAC----GGCGGCGa-------UGU----CCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 1111 0.73 0.38849
Target:  5'- ----cGCCGCCGC--CGGGAGCAgcCGCa -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCUCGU--GCG- -5'
25886 5' -57.4 NC_005337.1 + 5965 0.72 0.423388
Target:  5'- cUCGcGCCGCgCGCgagcagACGGGccaGGCGCGCg -3'
miRNA:   3'- aAGUaCGGCG-GCGa-----UGUCC---UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 56723 0.72 0.423388
Target:  5'- cUCAaGCUGCUGCUGCAGuAGCGCucGCa -3'
miRNA:   3'- aAGUaCGGCGGCGAUGUCcUCGUG--CG- -5'
25886 5' -57.4 NC_005337.1 + 54103 0.72 0.460098
Target:  5'- -gCGUGUacgggCGCUGCUACGuGGAGCGCGa -3'
miRNA:   3'- aaGUACG-----GCGGCGAUGU-CCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 65961 0.71 0.498428
Target:  5'- -gCGUGCCGCC-CUcCucGGGCACGCg -3'
miRNA:   3'- aaGUACGGCGGcGAuGucCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 23909 0.71 0.484843
Target:  5'- gUCGcUGCCGCgCGCccgcgcgcccgcgGCAGGcGCGCGCg -3'
miRNA:   3'- aAGU-ACGGCG-GCGa------------UGUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 122084 0.72 0.45076
Target:  5'- --gGUGUCGUCGCUGCAGGugGGCAacaugaGCa -3'
miRNA:   3'- aagUACGGCGGCGAUGUCC--UCGUg-----CG- -5'
25886 5' -57.4 NC_005337.1 + 1798 0.77 0.220551
Target:  5'- cUCcUGCCGCCGC-ACGGGAacccucuuugucaGCGCGCu -3'
miRNA:   3'- aAGuACGGCGGCGaUGUCCU-------------CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 133614 0.71 0.488707
Target:  5'- ----cGCUGCUGCUGCAGGAGguCa- -3'
miRNA:   3'- aaguaCGGCGGCGAUGUCCUCguGcg -5'
25886 5' -57.4 NC_005337.1 + 14429 0.75 0.295707
Target:  5'- -aCGUGCCGCCGCUGgcgcCGGGuaccgAGCGcCGCg -3'
miRNA:   3'- aaGUACGGCGGCGAU----GUCC-----UCGU-GCG- -5'
25886 5' -57.4 NC_005337.1 + 54874 0.72 0.432401
Target:  5'- --gAUGCCgcGCCGCcGCGGGAGCA-GCu -3'
miRNA:   3'- aagUACGG--CGGCGaUGUCCUCGUgCG- -5'
25886 5' -57.4 NC_005337.1 + 35968 0.71 0.488707
Target:  5'- ----cGCCGCCGCgGCAGGGGguaacaaaaaGCGCa -3'
miRNA:   3'- aaguaCGGCGGCGaUGUCCUCg---------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 65335 0.71 0.498428
Target:  5'- --gGUGCCGCCGCgcgggUACGGGucgauGC-CGCa -3'
miRNA:   3'- aagUACGGCGGCG-----AUGUCCu----CGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 66131 0.75 0.302737
Target:  5'- ----cGCCGcCCGCUAgGGGcGCGCGCg -3'
miRNA:   3'- aaguaCGGC-GGCGAUgUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 73338 0.73 0.405702
Target:  5'- -gCAUGCCGgCGCgGCAGuGGCGCGUc -3'
miRNA:   3'- aaGUACGGCgGCGaUGUCcUCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.