miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 44645 0.7 0.589132
Target:  5'- aUCGUG-CGCCGCaGCGGGcGCuACGUg -3'
miRNA:   3'- aAGUACgGCGGCGaUGUCCuCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 5423 0.71 0.498428
Target:  5'- gUUcgGCCGUgGUcagGCagAGGAGCACGCg -3'
miRNA:   3'- aAGuaCGGCGgCGa--UG--UCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 14429 0.75 0.295707
Target:  5'- -aCGUGCCGCCGCUGgcgcCGGGuaccgAGCGcCGCg -3'
miRNA:   3'- aaGUACGGCGGCGAU----GUCC-----UCGU-GCG- -5'
25886 5' -57.4 NC_005337.1 + 104613 0.7 0.578838
Target:  5'- ----cGgCGCCaCcGCGGGAGCACGCg -3'
miRNA:   3'- aaguaCgGCGGcGaUGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 1798 0.77 0.220551
Target:  5'- cUCcUGCCGCCGC-ACGGGAacccucuuugucaGCGCGCu -3'
miRNA:   3'- aAGuACGGCGGCGaUGUCCU-------------CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 4573 0.67 0.712896
Target:  5'- aUC-UGCUGCCGCgggcGCGGcGAcuGCGCGUg -3'
miRNA:   3'- aAGuACGGCGGCGa---UGUC-CU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 114110 0.74 0.363586
Target:  5'- cUUCGUGgccuCCGCCGCggccugcgGCAgcguGGAGCGCGCc -3'
miRNA:   3'- -AAGUAC----GGCGGCGa-------UGU----CCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 102170 0.68 0.702753
Target:  5'- -aCAUGCgCGCCGCcauguacaacgUGCuGGAG-ACGCu -3'
miRNA:   3'- aaGUACG-GCGGCG-----------AUGuCCUCgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 132313 0.68 0.692549
Target:  5'- gUCcgGCUGCuCGCUgacGCGGGcAGCgacauGCGCa -3'
miRNA:   3'- aAGuaCGGCG-GCGA---UGUCC-UCG-----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 59731 0.68 0.671995
Target:  5'- aUCAcG-CGCCGCgcgGC-GGAGCGCGUc -3'
miRNA:   3'- aAGUaCgGCGGCGa--UGuCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 12268 0.68 0.661663
Target:  5'- gUCGcgGCCGggucgcaccCCGCgcGCAGGAGCucGCGCa -3'
miRNA:   3'- aAGUa-CGGC---------GGCGa-UGUCCUCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 65105 0.69 0.630556
Target:  5'- -aCGUGCUugGCgaugUGCUGCAGcAGCACGCg -3'
miRNA:   3'- aaGUACGG--CG----GCGAUGUCcUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 132629 0.69 0.599459
Target:  5'- -cCAaGCuCGUCGCcGCGGGcGCGCGCa -3'
miRNA:   3'- aaGUaCG-GCGGCGaUGUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 96560 0.7 0.568583
Target:  5'- --gAUGCCGCUGCaGguGGAcgaccucacGCGCGCg -3'
miRNA:   3'- aagUACGGCGGCGaUguCCU---------CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 64003 0.7 0.558374
Target:  5'- cUUGUGCCGCgGCUuCcGGcacAGCGCGCa -3'
miRNA:   3'- aAGUACGGCGgCGAuGuCC---UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 75830 0.71 0.528086
Target:  5'- cUCGUGCacugCGUCGCggcauaaACAGGAGCgGCGCc -3'
miRNA:   3'- aAGUACG----GCGGCGa------UGUCCUCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 88257 0.71 0.518123
Target:  5'- -gCGUGCCGgCGCgccgGCGGGcGC-CGCg -3'
miRNA:   3'- aaGUACGGCgGCGa---UGUCCuCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 133614 0.71 0.488707
Target:  5'- ----cGCUGCUGCUGCAGGAGguCa- -3'
miRNA:   3'- aaguaCGGCGGCGAUGUCCUCguGcg -5'
25886 5' -57.4 NC_005337.1 + 54103 0.72 0.460098
Target:  5'- -gCGUGUacgggCGCUGCUACGuGGAGCGCGa -3'
miRNA:   3'- aaGUACG-----GCGGCGAUGU-CCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 5965 0.72 0.423388
Target:  5'- cUCGcGCCGCgCGCgagcagACGGGccaGGCGCGCg -3'
miRNA:   3'- aAGUaCGGCG-GCGa-----UGUCC---UCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.