miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 132629 0.69 0.599459
Target:  5'- -cCAaGCuCGUCGCcGCGGGcGCGCGCa -3'
miRNA:   3'- aaGUaCG-GCGGCGaUGUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 9001 0.68 0.651307
Target:  5'- -cCGUGCCGggGCUGCAGcgcauGAGUACGUg -3'
miRNA:   3'- aaGUACGGCggCGAUGUC-----CUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 1111 0.73 0.38849
Target:  5'- ----cGCCGCCGC--CGGGAGCAgcCGCa -3'
miRNA:   3'- aaguaCGGCGGCGauGUCCUCGU--GCG- -5'
25886 5' -57.4 NC_005337.1 + 56723 0.72 0.423388
Target:  5'- cUCAaGCUGCUGCUGCAGuAGCGCucGCa -3'
miRNA:   3'- aAGUaCGGCGGCGAUGUCcUCGUG--CG- -5'
25886 5' -57.4 NC_005337.1 + 64365 0.71 0.479075
Target:  5'- -cCGUGuCCaGCgCGC-GCAGGAGCACGUu -3'
miRNA:   3'- aaGUAC-GG-CG-GCGaUGUCCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 35968 0.71 0.488707
Target:  5'- ----cGCCGCCGCgGCAGGGGguaacaaaaaGCGCa -3'
miRNA:   3'- aaguaCGGCGGCGaUGUCCUCg---------UGCG- -5'
25886 5' -57.4 NC_005337.1 + 109869 0.71 0.518123
Target:  5'- ----gGCCGCCGCcaUGCAccGGAGCAUGg -3'
miRNA:   3'- aaguaCGGCGGCG--AUGU--CCUCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 87801 0.7 0.548217
Target:  5'- ----cGCgGCUGCUGCccGGGAGCuCGCg -3'
miRNA:   3'- aaguaCGgCGGCGAUG--UCCUCGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 77137 0.7 0.558374
Target:  5'- -gCGUGCCGCCGCc----GAGCAgCGCg -3'
miRNA:   3'- aaGUACGGCGGCGaugucCUCGU-GCG- -5'
25886 5' -57.4 NC_005337.1 + 111838 0.7 0.568583
Target:  5'- ----cGUCGUagaugaGCUGCAGGAGCAgGCc -3'
miRNA:   3'- aaguaCGGCGg-----CGAUGUCCUCGUgCG- -5'
25886 5' -57.4 NC_005337.1 + 23725 0.66 0.781377
Target:  5'- aUCcUGaCCGCCGCcGC-GGAGCG-GCa -3'
miRNA:   3'- aAGuAC-GGCGGCGaUGuCCUCGUgCG- -5'
25886 5' -57.4 NC_005337.1 + 127363 0.66 0.771931
Target:  5'- aUgAUGCUGCgCGCcgGCGcGGAcccGCGCGCg -3'
miRNA:   3'- aAgUACGGCG-GCGa-UGU-CCU---CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 85405 0.68 0.671995
Target:  5'- ----gGCCGCCGg-GCGGGGaCGCGCa -3'
miRNA:   3'- aaguaCGGCGGCgaUGUCCUcGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 99432 0.68 0.686401
Target:  5'- ----cGCCGCCGCauauaugccccaucaUGCGGGAGauagagGCGCu -3'
miRNA:   3'- aaguaCGGCGGCG---------------AUGUCCUCg-----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 102170 0.68 0.702753
Target:  5'- -aCAUGCgCGCCGCcauguacaacgUGCuGGAG-ACGCu -3'
miRNA:   3'- aaGUACG-GCGGCG-----------AUGuCCUCgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 4573 0.67 0.712896
Target:  5'- aUC-UGCUGCCGCgggcGCGGcGAcuGCGCGUg -3'
miRNA:   3'- aAGuACGGCGGCGa---UGUC-CU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 107863 0.67 0.722968
Target:  5'- aUCGcgGCCGCCGC-----GAGCACGUa -3'
miRNA:   3'- aAGUa-CGGCGGCGaugucCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 57262 0.67 0.73296
Target:  5'- gUUCggGCacgggGCCGC-GCGGGgccGGCGCGCg -3'
miRNA:   3'- -AAGuaCGg----CGGCGaUGUCC---UCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 62954 0.67 0.742862
Target:  5'- ----cGCCGCCGC-GCGGGucGC-CGCc -3'
miRNA:   3'- aaguaCGGCGGCGaUGUCCu-CGuGCG- -5'
25886 5' -57.4 NC_005337.1 + 50314 0.67 0.752664
Target:  5'- ----cGCCGCCGCUGCccu-GCGCGg -3'
miRNA:   3'- aaguaCGGCGGCGAUGuccuCGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.