miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25886 5' -57.4 NC_005337.1 + 99432 0.68 0.686401
Target:  5'- ----cGCCGCCGCauauaugccccaucaUGCGGGAGauagagGCGCu -3'
miRNA:   3'- aaguaCGGCGGCG---------------AUGUCCUCg-----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 65526 0.68 0.702753
Target:  5'- --gGUGCgGCCGgUGCuGGAG-GCGCa -3'
miRNA:   3'- aagUACGgCGGCgAUGuCCUCgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 111025 0.67 0.712896
Target:  5'- -aCGUGCCGCCGUcacgaccuccccUGgAGGAugACGCg -3'
miRNA:   3'- aaGUACGGCGGCG------------AUgUCCUcgUGCG- -5'
25886 5' -57.4 NC_005337.1 + 66505 0.67 0.716934
Target:  5'- cUCGcUGgaGCCGCUGCAgccggccgagacgcuGGAGCuGCGCg -3'
miRNA:   3'- aAGU-ACggCGGCGAUGU---------------CCUCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 889 0.67 0.73296
Target:  5'- ----aGCgCGCCGa-GCAGGAGCccgaGCGCg -3'
miRNA:   3'- aaguaCG-GCGGCgaUGUCCUCG----UGCG- -5'
25886 5' -57.4 NC_005337.1 + 13895 0.67 0.752664
Target:  5'- -aCGUGCCGCacgaGCcgGCAGGcGCGC-Cg -3'
miRNA:   3'- aaGUACGGCGg---CGa-UGUCCuCGUGcG- -5'
25886 5' -57.4 NC_005337.1 + 108755 0.7 0.558374
Target:  5'- -gCGUGg-GCCGCUGCcuGGAGCGCGUc -3'
miRNA:   3'- aaGUACggCGGCGAUGu-CCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 54874 0.72 0.432401
Target:  5'- --gAUGCCgcGCCGCcGCGGGAGCA-GCu -3'
miRNA:   3'- aagUACGG--CGGCGaUGUCCUCGUgCG- -5'
25886 5' -57.4 NC_005337.1 + 95903 0.7 0.548217
Target:  5'- cUCGUGCuCGCgGCgacgGCGGccGCGCGCg -3'
miRNA:   3'- aAGUACG-GCGgCGa---UGUCcuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 111209 0.66 0.808852
Target:  5'- -gCAcgGCCGCCGCguucc-GGCGCGCg -3'
miRNA:   3'- aaGUa-CGGCGGCGauguccUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 115203 0.66 0.815058
Target:  5'- -aCAcGgUGCCGCUGCGGGcgcugcugaagaugGGCGCGg -3'
miRNA:   3'- aaGUaCgGCGGCGAUGUCC--------------UCGUGCg -5'
25886 5' -57.4 NC_005337.1 + 107245 0.71 0.528086
Target:  5'- cUCGcgGCUGUCGCUGCuggccgGGGAGCACa- -3'
miRNA:   3'- aAGUa-CGGCGGCGAUG------UCCUCGUGcg -5'
25886 5' -57.4 NC_005337.1 + 65961 0.71 0.498428
Target:  5'- -gCGUGCCGCC-CUcCucGGGCACGCg -3'
miRNA:   3'- aaGUACGGCGGcGAuGucCUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 23909 0.71 0.484843
Target:  5'- gUCGcUGCCGCgCGCccgcgcgcccgcgGCAGGcGCGCGCg -3'
miRNA:   3'- aAGU-ACGGCG-GCGa------------UGUCCuCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 8867 0.66 0.817693
Target:  5'- ----cGCCGCCG-UGCAuGAcgGCACGCa -3'
miRNA:   3'- aaguaCGGCGGCgAUGUcCU--CGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 73338 0.73 0.405702
Target:  5'- -gCAUGCCGgCGCgGCAGuGGCGCGUc -3'
miRNA:   3'- aaGUACGGCgGCGaUGUCcUCGUGCG- -5'
25886 5' -57.4 NC_005337.1 + 64328 0.69 0.60981
Target:  5'- gUUCAUG-CGCCGCUuCGGGAucCGCGUg -3'
miRNA:   3'- -AAGUACgGCGGCGAuGUCCUc-GUGCG- -5'
25886 5' -57.4 NC_005337.1 + 91779 0.67 0.742862
Target:  5'- -aCGU-CCGCaGCUuCAGGAGCucGCGCg -3'
miRNA:   3'- aaGUAcGGCGgCGAuGUCCUCG--UGCG- -5'
25886 5' -57.4 NC_005337.1 + 133159 0.67 0.73296
Target:  5'- -gCGUGCUGCgGCUGCucccGGcGGCgGCGCu -3'
miRNA:   3'- aaGUACGGCGgCGAUGu---CC-UCG-UGCG- -5'
25886 5' -57.4 NC_005337.1 + 2803 0.67 0.742862
Target:  5'- -gCAUGUgcacuaggCGCUGCUGCAGGAcGuCACGg -3'
miRNA:   3'- aaGUACG--------GCGGCGAUGUCCU-C-GUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.