miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25891 3' -56.7 NC_005337.1 + 83895 0.66 0.856617
Target:  5'- aGUUgUCCGCCGGGuacgggGGCGGCGc- -3'
miRNA:   3'- gCGAgAGGCGGCUCuag---UCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 49287 0.66 0.856617
Target:  5'- gCGUgaUCUCCGCgaaCGGGAUCAcguaccGCGGCGa- -3'
miRNA:   3'- -GCG--AGAGGCG---GCUCUAGU------CGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 114679 0.66 0.856617
Target:  5'- cCGcCUCUCCGCUggacgcagugGAGAUCcucgcGCGGC-UCa -3'
miRNA:   3'- -GC-GAGAGGCGG----------CUCUAGu----CGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 122564 0.66 0.854257
Target:  5'- uGCUgCUCCaGCCGAGGgugaacCGGCugcucugccgguuuGGCGUCu -3'
miRNA:   3'- gCGA-GAGG-CGGCUCUa-----GUCG--------------UCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 83680 0.66 0.848679
Target:  5'- gGCU-UCCGCCGcu-UCGGC-GCGUCg -3'
miRNA:   3'- gCGAgAGGCGGCucuAGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 112886 0.66 0.84054
Target:  5'- cCGCgg-CCGCCGAGAUCGcGUcuugGGCGc- -3'
miRNA:   3'- -GCGagaGGCGGCUCUAGU-CG----UCGUag -5'
25891 3' -56.7 NC_005337.1 + 16705 0.66 0.84054
Target:  5'- gGC-CUCCgcuGCCGGGugacgcGUCAGUAGCAg- -3'
miRNA:   3'- gCGaGAGG---CGGCUC------UAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 3779 0.66 0.832208
Target:  5'- uGCUUUCCGCaCGAgcgacgcaGAUCGGCgacgGGCAc- -3'
miRNA:   3'- gCGAGAGGCG-GCU--------CUAGUCG----UCGUag -5'
25891 3' -56.7 NC_005337.1 + 114177 0.66 0.832208
Target:  5'- gCGCUCU-CGCUGAuGG-CGGaCGGCAUCc -3'
miRNA:   3'- -GCGAGAgGCGGCU-CUaGUC-GUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 102368 0.66 0.823689
Target:  5'- gCGC-CUUCGCCGAGAccaUCA-CGGCGg- -3'
miRNA:   3'- -GCGaGAGGCGGCUCU---AGUcGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 105416 0.66 0.823689
Target:  5'- gCGCUgaUCGCCG---UCGGguGCAUCg -3'
miRNA:   3'- -GCGAgaGGCGGCucuAGUCguCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 16502 0.66 0.823689
Target:  5'- aGUUCUcCCGcCCGuAGAaguUUAGCGGCGUUu -3'
miRNA:   3'- gCGAGA-GGC-GGC-UCU---AGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 92519 0.66 0.823689
Target:  5'- gGCUacaucauagCCGCCGAG--CAGCAGCGc- -3'
miRNA:   3'- gCGAga-------GGCGGCUCuaGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 44572 0.66 0.823689
Target:  5'- aCGCgg-CCGCCGcGAUCGGCgucuccgccaagGGCGUg -3'
miRNA:   3'- -GCGagaGGCGGCuCUAGUCG------------UCGUAg -5'
25891 3' -56.7 NC_005337.1 + 29511 0.67 0.814992
Target:  5'- cCGCg--CCGUgCGAGAUCAuGCAGUcgCg -3'
miRNA:   3'- -GCGagaGGCG-GCUCUAGU-CGUCGuaG- -5'
25891 3' -56.7 NC_005337.1 + 130824 0.67 0.806126
Target:  5'- aGUg--CCGCCGuGAUCAgGCGGC-UCa -3'
miRNA:   3'- gCGagaGGCGGCuCUAGU-CGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 39828 0.67 0.803434
Target:  5'- aGCUgCUCCGCCGcacggaGGAguacgucgacggcuUCGGCAucaGCGUCu -3'
miRNA:   3'- gCGA-GAGGCGGC------UCU--------------AGUCGU---CGUAG- -5'
25891 3' -56.7 NC_005337.1 + 3093 0.67 0.796187
Target:  5'- gCGCUggcccucCUCCGCgCGc-AUCAGCAGCAg- -3'
miRNA:   3'- -GCGA-------GAGGCG-GCucUAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 72297 0.67 0.791608
Target:  5'- uGCUCUCugcguCGCCGAucacGAacacgcccaucacgcUgAGCAGCAUCa -3'
miRNA:   3'- gCGAGAG-----GCGGCU----CU---------------AgUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 77966 0.67 0.787918
Target:  5'- gCGCUC-CUG-CGAGAUCucgAGCAGCGg- -3'
miRNA:   3'- -GCGAGaGGCgGCUCUAG---UCGUCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.