miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25891 3' -56.7 NC_005337.1 + 83163 0.68 0.730152
Target:  5'- uCGCcCUcCCGCCG-GAUCuGCAGCu-- -3'
miRNA:   3'- -GCGaGA-GGCGGCuCUAGuCGUCGuag -5'
25891 3' -56.7 NC_005337.1 + 46655 0.68 0.710101
Target:  5'- gGCUCUCCGCauaaaacuCGAGAagcUCaAGCAGauCGUCa -3'
miRNA:   3'- gCGAGAGGCG--------GCUCU---AG-UCGUC--GUAG- -5'
25891 3' -56.7 NC_005337.1 + 7393 0.68 0.710101
Target:  5'- gCGUUCcUCGCCacgagcacgcaGAGGUgCAGCGGCGUCc -3'
miRNA:   3'- -GCGAGaGGCGG-----------CUCUA-GUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 28365 0.68 0.710101
Target:  5'- uCGUUgUCCGCCaGGGUCAGCcGCcccuuGUCg -3'
miRNA:   3'- -GCGAgAGGCGGcUCUAGUCGuCG-----UAG- -5'
25891 3' -56.7 NC_005337.1 + 4750 0.68 0.710101
Target:  5'- aCGCUCgcgCCGCgCGcGAgCAGC-GCGUCg -3'
miRNA:   3'- -GCGAGa--GGCG-GCuCUaGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 120212 0.68 0.740052
Target:  5'- aGCaCcUCGCCGAGG-CGGaCAGCAUCg -3'
miRNA:   3'- gCGaGaGGCGGCUCUaGUC-GUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 53744 0.67 0.778594
Target:  5'- -cCUCuUCCGCCcgGAGAUgCAGCugcGCGUCg -3'
miRNA:   3'- gcGAG-AGGCGG--CUCUA-GUCGu--CGUAG- -5'
25891 3' -56.7 NC_005337.1 + 1110 0.67 0.769137
Target:  5'- gCGC-CgCCGCCGGGAgCAGCcGCAg- -3'
miRNA:   3'- -GCGaGaGGCGGCUCUaGUCGuCGUag -5'
25891 3' -56.7 NC_005337.1 + 119530 0.67 0.769137
Target:  5'- gCGCUCUUCGgCGAuucGGUgCAGCGGCuggCg -3'
miRNA:   3'- -GCGAGAGGCgGCU---CUA-GUCGUCGua-G- -5'
25891 3' -56.7 NC_005337.1 + 30709 0.67 0.778594
Target:  5'- uCGCggaaCUCCGCCGGGAagUC-GCAGaaGUCg -3'
miRNA:   3'- -GCGa---GAGGCGGCUCU--AGuCGUCg-UAG- -5'
25891 3' -56.7 NC_005337.1 + 29511 0.67 0.814992
Target:  5'- cCGCg--CCGUgCGAGAUCAuGCAGUcgCg -3'
miRNA:   3'- -GCGagaGGCG-GCUCUAGU-CGUCGuaG- -5'
25891 3' -56.7 NC_005337.1 + 130824 0.67 0.806126
Target:  5'- aGUg--CCGCCGuGAUCAgGCGGC-UCa -3'
miRNA:   3'- gCGagaGGCGGCuCUAGU-CGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 3093 0.67 0.796187
Target:  5'- gCGCUggcccucCUCCGCgCGc-AUCAGCAGCAg- -3'
miRNA:   3'- -GCGA-------GAGGCG-GCucUAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 39828 0.67 0.803434
Target:  5'- aGCUgCUCCGCCGcacggaGGAguacgucgacggcuUCGGCAucaGCGUCu -3'
miRNA:   3'- gCGA-GAGGCGGC------UCU--------------AGUCGU---CGUAG- -5'
25891 3' -56.7 NC_005337.1 + 72297 0.67 0.791608
Target:  5'- uGCUCUCugcguCGCCGAucacGAacacgcccaucacgcUgAGCAGCAUCa -3'
miRNA:   3'- gCGAGAG-----GCGGCU----CU---------------AgUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 77966 0.67 0.787918
Target:  5'- gCGCUC-CUG-CGAGAUCucgAGCAGCGg- -3'
miRNA:   3'- -GCGAGaGGCgGCUCUAG---UCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 103868 0.67 0.787918
Target:  5'- gGCagUUCGCgGAGcgCGGCGGCcUCg -3'
miRNA:   3'- gCGagAGGCGgCUCuaGUCGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 1110 0.67 0.769137
Target:  5'- gCGC-CgCCGCCGGGAgCAGCcGCAg- -3'
miRNA:   3'- -GCGaGaGGCGGCUCUaGUCGuCGUag -5'
25891 3' -56.7 NC_005337.1 + 58423 0.67 0.778594
Target:  5'- aGCUCUUccggagCGgCGAGAcgaUCAGCGGCGa- -3'
miRNA:   3'- gCGAGAG------GCgGCUCU---AGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 114679 0.66 0.856617
Target:  5'- cCGcCUCUCCGCUggacgcagugGAGAUCcucgcGCGGC-UCa -3'
miRNA:   3'- -GC-GAGAGGCGG----------CUCUAGu----CGUCGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.