miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25891 3' -56.7 NC_005337.1 + 85407 1.09 0.001861
Target:  5'- gCGCUCUCCGCCGAGAUCAGCAGCAUCu -3'
miRNA:   3'- -GCGAGAGGCGGCUCUAGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 91086 0.78 0.243262
Target:  5'- gGCUCUUgGCCGGGGcgaUCAGCGGCGa- -3'
miRNA:   3'- gCGAGAGgCGGCUCU---AGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 81308 0.77 0.274463
Target:  5'- cCGCaUCUCCGCgGAGAaCGGCGGCGc- -3'
miRNA:   3'- -GCG-AGAGGCGgCUCUaGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 100752 0.77 0.281074
Target:  5'- gCGCUCUCCGCCGcGAUCGaccGCuGCAa- -3'
miRNA:   3'- -GCGAGAGGCGGCuCUAGU---CGuCGUag -5'
25891 3' -56.7 NC_005337.1 + 42395 0.74 0.394589
Target:  5'- gGCcuaaCUCCGCCGAGAUCcucacgaAGCGGC-UCa -3'
miRNA:   3'- gCGa---GAGGCGGCUCUAG-------UCGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 52970 0.73 0.467567
Target:  5'- cCGUUCUCCGCgGAGAUgCGGUuguugAGCGUg -3'
miRNA:   3'- -GCGAGAGGCGgCUCUA-GUCG-----UCGUAg -5'
25891 3' -56.7 NC_005337.1 + 91215 0.73 0.477057
Target:  5'- gCGCg--CCGCCGGuGGUCAGC-GCGUCc -3'
miRNA:   3'- -GCGagaGGCGGCU-CUAGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 111532 0.72 0.496317
Target:  5'- cCGCgCUCCGCCGcgugcaggucgGGGUCGGCGGUg-- -3'
miRNA:   3'- -GCGaGAGGCGGC-----------UCUAGUCGUCGuag -5'
25891 3' -56.7 NC_005337.1 + 114116 0.72 0.506078
Target:  5'- gGC-CUCCGCCGcGGccugCGGCAGCGUg -3'
miRNA:   3'- gCGaGAGGCGGCuCUa---GUCGUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 21931 0.72 0.51592
Target:  5'- cCGCgcgCUCCGCCGAGcUC-GCGGaGUCa -3'
miRNA:   3'- -GCGa--GAGGCGGCUCuAGuCGUCgUAG- -5'
25891 3' -56.7 NC_005337.1 + 105600 0.71 0.545883
Target:  5'- gGgaCUUCGCCGAGGUCGGggcCGGCGUg -3'
miRNA:   3'- gCgaGAGGCGGCUCUAGUC---GUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 114483 0.71 0.555997
Target:  5'- cCGCcCUacgacgaCGCCGAGucCAGCGGCGUCg -3'
miRNA:   3'- -GCGaGAg------GCGGCUCuaGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 32895 0.71 0.576381
Target:  5'- gGCUgUCgGCCGGGAUCAGCgAGgGg- -3'
miRNA:   3'- gCGAgAGgCGGCUCUAGUCG-UCgUag -5'
25891 3' -56.7 NC_005337.1 + 93595 0.71 0.576381
Target:  5'- gGCUCUCCGCCGAGGaCAuGgAcGCgAUCa -3'
miRNA:   3'- gCGAGAGGCGGCUCUaGU-CgU-CG-UAG- -5'
25891 3' -56.7 NC_005337.1 + 68455 0.7 0.607244
Target:  5'- aGCUCcagCGCCGGGAUCuccugcuucuGCAGCAUg -3'
miRNA:   3'- gCGAGag-GCGGCUCUAGu---------CGUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 94780 0.7 0.607244
Target:  5'- aGCa--CCGCCGGucGAUCGGCGGCGUa -3'
miRNA:   3'- gCGagaGGCGGCU--CUAGUCGUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 104719 0.7 0.627926
Target:  5'- gGC-CgCCGCCGcGG-CGGCGGCAUCa -3'
miRNA:   3'- gCGaGaGGCGGCuCUaGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 110744 0.7 0.638276
Target:  5'- gGC-C-CCGCCGGGGUCcgcgAGCAGCGa- -3'
miRNA:   3'- gCGaGaGGCGGCUCUAG----UCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 38685 0.7 0.638276
Target:  5'- aCGCUgUUCGCCGccuGGuGUCGGCGGCGg- -3'
miRNA:   3'- -GCGAgAGGCGGC---UC-UAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 1140 0.7 0.638276
Target:  5'- gCGCgaccagCUCCGCgGGGAUCA-CAGC-UCg -3'
miRNA:   3'- -GCGa-----GAGGCGgCUCUAGUcGUCGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.