Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25891 | 3' | -56.7 | NC_005337.1 | + | 8451 | 0.7 | 0.648621 |
Target: 5'- cCGCUUcaCCGCCGAuGUgCGGCAGCAg- -3' miRNA: 3'- -GCGAGa-GGCGGCUcUA-GUCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 14198 | 0.7 | 0.648621 |
Target: 5'- uCGCaggggUCCGCCGAGA-UAGCGGCGg- -3' miRNA: 3'- -GCGag---AGGCGGCUCUaGUCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 104633 | 0.7 | 0.648621 |
Target: 5'- gCGCaUCUCgGagcCCGuGAUCAGCAGCGa- -3' miRNA: 3'- -GCG-AGAGgC---GGCuCUAGUCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 86711 | 0.69 | 0.658953 |
Target: 5'- gGCUCgUCgGCgGuGGUCAgucGCGGCAUCa -3' miRNA: 3'- gCGAG-AGgCGgCuCUAGU---CGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 115867 | 0.69 | 0.669262 |
Target: 5'- uCGUUCUcgCCGuCCGAGAUgGucgaguaccGCGGCAUCg -3' miRNA: 3'- -GCGAGA--GGC-GGCUCUAgU---------CGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 106644 | 0.69 | 0.679541 |
Target: 5'- gCGCgCUCCGCCaAGAUCccggagcgcgAGCGGCGg- -3' miRNA: 3'- -GCGaGAGGCGGcUCUAG----------UCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 74210 | 0.69 | 0.679541 |
Target: 5'- uGUUCUCCGCCGuGcuugCGGCGGaugAUCg -3' miRNA: 3'- gCGAGAGGCGGCuCua--GUCGUCg--UAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 123096 | 0.69 | 0.68978 |
Target: 5'- aGCUCUCCGCCGuauUCgAGCGGgAc- -3' miRNA: 3'- gCGAGAGGCGGCucuAG-UCGUCgUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 36791 | 0.69 | 0.68978 |
Target: 5'- uGCgacCCGCUGGGcGUCAGCcGCGUCg -3' miRNA: 3'- gCGagaGGCGGCUC-UAGUCGuCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 103095 | 0.69 | 0.69997 |
Target: 5'- gGCUCgUCgGCCGAcAUCGaccucccggaguGCGGCAUCg -3' miRNA: 3'- gCGAG-AGgCGGCUcUAGU------------CGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 130087 | 0.69 | 0.69997 |
Target: 5'- aCGCaggCCguugagGCCGGGGUCAGCGacGCAUCa -3' miRNA: 3'- -GCGagaGG------CGGCUCUAGUCGU--CGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 68195 | 0.69 | 0.69997 |
Target: 5'- gCGC-CUCCGCCGccg-CGGCcGCGUCc -3' miRNA: 3'- -GCGaGAGGCGGCucuaGUCGuCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 61715 | 0.68 | 0.709091 |
Target: 5'- aGUUCUCCuccuggaGCCGGGAcaugCGGCAGUAg- -3' miRNA: 3'- gCGAGAGG-------CGGCUCUa---GUCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 4750 | 0.68 | 0.710101 |
Target: 5'- aCGCUCgcgCCGCgCGcGAgCAGC-GCGUCg -3' miRNA: 3'- -GCGAGa--GGCG-GCuCUaGUCGuCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 7393 | 0.68 | 0.710101 |
Target: 5'- gCGUUCcUCGCCacgagcacgcaGAGGUgCAGCGGCGUCc -3' miRNA: 3'- -GCGAGaGGCGG-----------CUCUA-GUCGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 28365 | 0.68 | 0.710101 |
Target: 5'- uCGUUgUCCGCCaGGGUCAGCcGCcccuuGUCg -3' miRNA: 3'- -GCGAgAGGCGGcUCUAGUCGuCG-----UAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 46655 | 0.68 | 0.710101 |
Target: 5'- gGCUCUCCGCauaaaacuCGAGAagcUCaAGCAGauCGUCa -3' miRNA: 3'- gCGAGAGGCG--------GCUCU---AG-UCGUC--GUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 83163 | 0.68 | 0.730152 |
Target: 5'- uCGCcCUcCCGCCG-GAUCuGCAGCu-- -3' miRNA: 3'- -GCGaGA-GGCGGCuCUAGuCGUCGuag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 55267 | 0.68 | 0.734123 |
Target: 5'- uCGCUCUCggUGCgCGAGGUCGGCAuccccgacuacauccGCAa- -3' miRNA: 3'- -GCGAGAG--GCG-GCUCUAGUCGU---------------CGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 120212 | 0.68 | 0.740052 |
Target: 5'- aGCaCcUCGCCGAGG-CGGaCAGCAUCg -3' miRNA: 3'- gCGaGaGGCGGCUCUaGUC-GUCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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