miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25891 3' -56.7 NC_005337.1 + 1110 0.67 0.769137
Target:  5'- gCGC-CgCCGCCGGGAgCAGCcGCAg- -3'
miRNA:   3'- -GCGaGaGGCGGCUCUaGUCGuCGUag -5'
25891 3' -56.7 NC_005337.1 + 1110 0.67 0.769137
Target:  5'- gCGC-CgCCGCCGGGAgCAGCcGCAg- -3'
miRNA:   3'- -GCGaGaGGCGGCUCUaGUCGuCGUag -5'
25891 3' -56.7 NC_005337.1 + 1140 0.7 0.638276
Target:  5'- gCGCgaccagCUCCGCgGGGAUCA-CAGC-UCg -3'
miRNA:   3'- -GCGa-----GAGGCGgCUCUAGUcGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 3093 0.67 0.796187
Target:  5'- gCGCUggcccucCUCCGCgCGc-AUCAGCAGCAg- -3'
miRNA:   3'- -GCGA-------GAGGCG-GCucUAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 3779 0.66 0.832208
Target:  5'- uGCUUUCCGCaCGAgcgacgcaGAUCGGCgacgGGCAc- -3'
miRNA:   3'- gCGAGAGGCG-GCU--------CUAGUCG----UCGUag -5'
25891 3' -56.7 NC_005337.1 + 4750 0.68 0.710101
Target:  5'- aCGCUCgcgCCGCgCGcGAgCAGC-GCGUCg -3'
miRNA:   3'- -GCGAGa--GGCG-GCuCUaGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 7393 0.68 0.710101
Target:  5'- gCGUUCcUCGCCacgagcacgcaGAGGUgCAGCGGCGUCc -3'
miRNA:   3'- -GCGAGaGGCGG-----------CUCUA-GUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 8451 0.7 0.648621
Target:  5'- cCGCUUcaCCGCCGAuGUgCGGCAGCAg- -3'
miRNA:   3'- -GCGAGa-GGCGGCUcUA-GUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 14198 0.7 0.648621
Target:  5'- uCGCaggggUCCGCCGAGA-UAGCGGCGg- -3'
miRNA:   3'- -GCGag---AGGCGGCUCUaGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 16502 0.66 0.823689
Target:  5'- aGUUCUcCCGcCCGuAGAaguUUAGCGGCGUUu -3'
miRNA:   3'- gCGAGA-GGC-GGC-UCU---AGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 16705 0.66 0.84054
Target:  5'- gGC-CUCCgcuGCCGGGugacgcGUCAGUAGCAg- -3'
miRNA:   3'- gCGaGAGG---CGGCUC------UAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 21931 0.72 0.51592
Target:  5'- cCGCgcgCUCCGCCGAGcUC-GCGGaGUCa -3'
miRNA:   3'- -GCGa--GAGGCGGCUCuAGuCGUCgUAG- -5'
25891 3' -56.7 NC_005337.1 + 28365 0.68 0.710101
Target:  5'- uCGUUgUCCGCCaGGGUCAGCcGCcccuuGUCg -3'
miRNA:   3'- -GCGAgAGGCGGcUCUAGUCGuCG-----UAG- -5'
25891 3' -56.7 NC_005337.1 + 29511 0.67 0.814992
Target:  5'- cCGCg--CCGUgCGAGAUCAuGCAGUcgCg -3'
miRNA:   3'- -GCGagaGGCG-GCUCUAGU-CGUCGuaG- -5'
25891 3' -56.7 NC_005337.1 + 30709 0.67 0.778594
Target:  5'- uCGCggaaCUCCGCCGGGAagUC-GCAGaaGUCg -3'
miRNA:   3'- -GCGa---GAGGCGGCUCU--AGuCGUCg-UAG- -5'
25891 3' -56.7 NC_005337.1 + 32895 0.71 0.576381
Target:  5'- gGCUgUCgGCCGGGAUCAGCgAGgGg- -3'
miRNA:   3'- gCGAgAGgCGGCUCUAGUCG-UCgUag -5'
25891 3' -56.7 NC_005337.1 + 36791 0.69 0.68978
Target:  5'- uGCgacCCGCUGGGcGUCAGCcGCGUCg -3'
miRNA:   3'- gCGagaGGCGGCUC-UAGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 37158 0.68 0.749856
Target:  5'- aGCUCcgccaCCGCCGAGcgCcacuGCGGCAc- -3'
miRNA:   3'- gCGAGa----GGCGGCUCuaGu---CGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 38685 0.7 0.638276
Target:  5'- aCGCUgUUCGCCGccuGGuGUCGGCGGCGg- -3'
miRNA:   3'- -GCGAgAGGCGGC---UC-UAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 39828 0.67 0.803434
Target:  5'- aGCUgCUCCGCCGcacggaGGAguacgucgacggcuUCGGCAucaGCGUCu -3'
miRNA:   3'- gCGA-GAGGCGGC------UCU--------------AGUCGU---CGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.