Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25891 | 3' | -56.7 | NC_005337.1 | + | 85407 | 1.09 | 0.001861 |
Target: 5'- gCGCUCUCCGCCGAGAUCAGCAGCAUCu -3' miRNA: 3'- -GCGAGAGGCGGCUCUAGUCGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 86711 | 0.69 | 0.658953 |
Target: 5'- gGCUCgUCgGCgGuGGUCAgucGCGGCAUCa -3' miRNA: 3'- gCGAG-AGgCGgCuCUAGU---CGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 91086 | 0.78 | 0.243262 |
Target: 5'- gGCUCUUgGCCGGGGcgaUCAGCGGCGa- -3' miRNA: 3'- gCGAGAGgCGGCUCU---AGUCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 91215 | 0.73 | 0.477057 |
Target: 5'- gCGCg--CCGCCGGuGGUCAGC-GCGUCc -3' miRNA: 3'- -GCGagaGGCGGCU-CUAGUCGuCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 92519 | 0.66 | 0.823689 |
Target: 5'- gGCUacaucauagCCGCCGAG--CAGCAGCGc- -3' miRNA: 3'- gCGAga-------GGCGGCUCuaGUCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 93595 | 0.71 | 0.576381 |
Target: 5'- gGCUCUCCGCCGAGGaCAuGgAcGCgAUCa -3' miRNA: 3'- gCGAGAGGCGGCUCUaGU-CgU-CG-UAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 94780 | 0.7 | 0.607244 |
Target: 5'- aGCa--CCGCCGGucGAUCGGCGGCGUa -3' miRNA: 3'- gCGagaGGCGGCU--CUAGUCGUCGUAg -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 100752 | 0.77 | 0.281074 |
Target: 5'- gCGCUCUCCGCCGcGAUCGaccGCuGCAa- -3' miRNA: 3'- -GCGAGAGGCGGCuCUAGU---CGuCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 102368 | 0.66 | 0.823689 |
Target: 5'- gCGC-CUUCGCCGAGAccaUCA-CGGCGg- -3' miRNA: 3'- -GCGaGAGGCGGCUCU---AGUcGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 103095 | 0.69 | 0.69997 |
Target: 5'- gGCUCgUCgGCCGAcAUCGaccucccggaguGCGGCAUCg -3' miRNA: 3'- gCGAG-AGgCGGCUcUAGU------------CGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 103868 | 0.67 | 0.787918 |
Target: 5'- gGCagUUCGCgGAGcgCGGCGGCcUCg -3' miRNA: 3'- gCGagAGGCGgCUCuaGUCGUCGuAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 104633 | 0.7 | 0.648621 |
Target: 5'- gCGCaUCUCgGagcCCGuGAUCAGCAGCGa- -3' miRNA: 3'- -GCG-AGAGgC---GGCuCUAGUCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 104719 | 0.7 | 0.627926 |
Target: 5'- gGC-CgCCGCCGcGG-CGGCGGCAUCa -3' miRNA: 3'- gCGaGaGGCGGCuCUaGUCGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 105416 | 0.66 | 0.823689 |
Target: 5'- gCGCUgaUCGCCG---UCGGguGCAUCg -3' miRNA: 3'- -GCGAgaGGCGGCucuAGUCguCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 105600 | 0.71 | 0.545883 |
Target: 5'- gGgaCUUCGCCGAGGUCGGggcCGGCGUg -3' miRNA: 3'- gCgaGAGGCGGCUCUAGUC---GUCGUAg -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 106644 | 0.69 | 0.679541 |
Target: 5'- gCGCgCUCCGCCaAGAUCccggagcgcgAGCGGCGg- -3' miRNA: 3'- -GCGaGAGGCGGcUCUAG----------UCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 109753 | 0.68 | 0.749856 |
Target: 5'- gCGCaUCUCCGCCGGcuUgGGCAcgggccgagcGCGUCg -3' miRNA: 3'- -GCG-AGAGGCGGCUcuAgUCGU----------CGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 110744 | 0.7 | 0.638276 |
Target: 5'- gGC-C-CCGCCGGGGUCcgcgAGCAGCGa- -3' miRNA: 3'- gCGaGaGGCGGCUCUAG----UCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 111532 | 0.72 | 0.496317 |
Target: 5'- cCGCgCUCCGCCGcgugcaggucgGGGUCGGCGGUg-- -3' miRNA: 3'- -GCGaGAGGCGGC-----------UCUAGUCGUCGuag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 112886 | 0.66 | 0.84054 |
Target: 5'- cCGCgg-CCGCCGAGAUCGcGUcuugGGCGc- -3' miRNA: 3'- -GCGagaGGCGGCUCUAGU-CG----UCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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