miRNA display CGI


Results 61 - 73 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25891 3' -56.7 NC_005337.1 + 114116 0.72 0.506078
Target:  5'- gGC-CUCCGCCGcGGccugCGGCAGCGUg -3'
miRNA:   3'- gCGaGAGGCGGCuCUa---GUCGUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 114177 0.66 0.832208
Target:  5'- gCGCUCU-CGCUGAuGG-CGGaCGGCAUCc -3'
miRNA:   3'- -GCGAGAgGCGGCU-CUaGUC-GUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 114483 0.71 0.555997
Target:  5'- cCGCcCUacgacgaCGCCGAGucCAGCGGCGUCg -3'
miRNA:   3'- -GCGaGAg------GCGGCUCuaGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 114679 0.66 0.856617
Target:  5'- cCGcCUCUCCGCUggacgcagugGAGAUCcucgcGCGGC-UCa -3'
miRNA:   3'- -GC-GAGAGGCGG----------CUCUAGu----CGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 115867 0.69 0.669262
Target:  5'- uCGUUCUcgCCGuCCGAGAUgGucgaguaccGCGGCAUCg -3'
miRNA:   3'- -GCGAGA--GGC-GGCUCUAgU---------CGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 119530 0.67 0.769137
Target:  5'- gCGCUCUUCGgCGAuucGGUgCAGCGGCuggCg -3'
miRNA:   3'- -GCGAGAGGCgGCU---CUA-GUCGUCGua-G- -5'
25891 3' -56.7 NC_005337.1 + 120212 0.68 0.740052
Target:  5'- aGCaCcUCGCCGAGG-CGGaCAGCAUCg -3'
miRNA:   3'- gCGaGaGGCGGCUCUaGUC-GUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 122564 0.66 0.854257
Target:  5'- uGCUgCUCCaGCCGAGGgugaacCGGCugcucugccgguuuGGCGUCu -3'
miRNA:   3'- gCGA-GAGG-CGGCUCUa-----GUCG--------------UCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 123096 0.69 0.68978
Target:  5'- aGCUCUCCGCCGuauUCgAGCGGgAc- -3'
miRNA:   3'- gCGAGAGGCGGCucuAG-UCGUCgUag -5'
25891 3' -56.7 NC_005337.1 + 130087 0.69 0.69997
Target:  5'- aCGCaggCCguugagGCCGGGGUCAGCGacGCAUCa -3'
miRNA:   3'- -GCGagaGG------CGGCUCUAGUCGU--CGUAG- -5'
25891 3' -56.7 NC_005337.1 + 130824 0.67 0.806126
Target:  5'- aGUg--CCGCCGuGAUCAgGCGGC-UCa -3'
miRNA:   3'- gCGagaGGCGGCuCUAGU-CGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 133467 0.68 0.743986
Target:  5'- gCGCggacggCUCCGCgGAGcuggucugccucgucGUCGGCGGCGc- -3'
miRNA:   3'- -GCGa-----GAGGCGgCUC---------------UAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 133467 0.68 0.743986
Target:  5'- gCGCggacggCUCCGCgGAGcuggucugccucgucGUCGGCGGCGc- -3'
miRNA:   3'- -GCGa-----GAGGCGgCUC---------------UAGUCGUCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.