miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25891 3' -56.7 NC_005337.1 + 104719 0.7 0.627926
Target:  5'- gGC-CgCCGCCGcGG-CGGCGGCAUCa -3'
miRNA:   3'- gCGaGaGGCGGCuCUaGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 104633 0.7 0.648621
Target:  5'- gCGCaUCUCgGagcCCGuGAUCAGCAGCGa- -3'
miRNA:   3'- -GCG-AGAGgC---GGCuCUAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 103868 0.67 0.787918
Target:  5'- gGCagUUCGCgGAGcgCGGCGGCcUCg -3'
miRNA:   3'- gCGagAGGCGgCUCuaGUCGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 103095 0.69 0.69997
Target:  5'- gGCUCgUCgGCCGAcAUCGaccucccggaguGCGGCAUCg -3'
miRNA:   3'- gCGAG-AGgCGGCUcUAGU------------CGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 102368 0.66 0.823689
Target:  5'- gCGC-CUUCGCCGAGAccaUCA-CGGCGg- -3'
miRNA:   3'- -GCGaGAGGCGGCUCU---AGUcGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 100752 0.77 0.281074
Target:  5'- gCGCUCUCCGCCGcGAUCGaccGCuGCAa- -3'
miRNA:   3'- -GCGAGAGGCGGCuCUAGU---CGuCGUag -5'
25891 3' -56.7 NC_005337.1 + 94780 0.7 0.607244
Target:  5'- aGCa--CCGCCGGucGAUCGGCGGCGUa -3'
miRNA:   3'- gCGagaGGCGGCU--CUAGUCGUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 93595 0.71 0.576381
Target:  5'- gGCUCUCCGCCGAGGaCAuGgAcGCgAUCa -3'
miRNA:   3'- gCGAGAGGCGGCUCUaGU-CgU-CG-UAG- -5'
25891 3' -56.7 NC_005337.1 + 92519 0.66 0.823689
Target:  5'- gGCUacaucauagCCGCCGAG--CAGCAGCGc- -3'
miRNA:   3'- gCGAga-------GGCGGCUCuaGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 91215 0.73 0.477057
Target:  5'- gCGCg--CCGCCGGuGGUCAGC-GCGUCc -3'
miRNA:   3'- -GCGagaGGCGGCU-CUAGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 91086 0.78 0.243262
Target:  5'- gGCUCUUgGCCGGGGcgaUCAGCGGCGa- -3'
miRNA:   3'- gCGAGAGgCGGCUCU---AGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 86711 0.69 0.658953
Target:  5'- gGCUCgUCgGCgGuGGUCAgucGCGGCAUCa -3'
miRNA:   3'- gCGAG-AGgCGgCuCUAGU---CGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 85407 1.09 0.001861
Target:  5'- gCGCUCUCCGCCGAGAUCAGCAGCAUCu -3'
miRNA:   3'- -GCGAGAGGCGGCUCUAGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 83895 0.66 0.856617
Target:  5'- aGUUgUCCGCCGGGuacgggGGCGGCGc- -3'
miRNA:   3'- gCGAgAGGCGGCUCuag---UCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 83680 0.66 0.848679
Target:  5'- gGCU-UCCGCCGcu-UCGGC-GCGUCg -3'
miRNA:   3'- gCGAgAGGCGGCucuAGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 83163 0.68 0.730152
Target:  5'- uCGCcCUcCCGCCG-GAUCuGCAGCu-- -3'
miRNA:   3'- -GCGaGA-GGCGGCuCUAGuCGUCGuag -5'
25891 3' -56.7 NC_005337.1 + 81308 0.77 0.274463
Target:  5'- cCGCaUCUCCGCgGAGAaCGGCGGCGc- -3'
miRNA:   3'- -GCG-AGAGGCGgCUCUaGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 77966 0.67 0.787918
Target:  5'- gCGCUC-CUG-CGAGAUCucgAGCAGCGg- -3'
miRNA:   3'- -GCGAGaGGCgGCUCUAG---UCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 74210 0.69 0.679541
Target:  5'- uGUUCUCCGCCGuGcuugCGGCGGaugAUCg -3'
miRNA:   3'- gCGAGAGGCGGCuCua--GUCGUCg--UAG- -5'
25891 3' -56.7 NC_005337.1 + 72297 0.67 0.791608
Target:  5'- uGCUCUCugcguCGCCGAucacGAacacgcccaucacgcUgAGCAGCAUCa -3'
miRNA:   3'- gCGAGAG-----GCGGCU----CU---------------AgUCGUCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.