miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25891 3' -56.7 NC_005337.1 + 68455 0.7 0.607244
Target:  5'- aGCUCcagCGCCGGGAUCuccugcuucuGCAGCAUg -3'
miRNA:   3'- gCGAGag-GCGGCUCUAGu---------CGUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 68195 0.69 0.69997
Target:  5'- gCGC-CUCCGCCGccg-CGGCcGCGUCc -3'
miRNA:   3'- -GCGaGAGGCGGCucuaGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 65415 0.68 0.749856
Target:  5'- uGUUCUCCgGCgCGGGGcUGGUGGCGUCg -3'
miRNA:   3'- gCGAGAGG-CG-GCUCUaGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 61715 0.68 0.709091
Target:  5'- aGUUCUCCuccuggaGCCGGGAcaugCGGCAGUAg- -3'
miRNA:   3'- gCGAGAGG-------CGGCUCUa---GUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 58423 0.67 0.778594
Target:  5'- aGCUCUUccggagCGgCGAGAcgaUCAGCGGCGa- -3'
miRNA:   3'- gCGAGAG------GCgGCUCU---AGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 55267 0.68 0.734123
Target:  5'- uCGCUCUCggUGCgCGAGGUCGGCAuccccgacuacauccGCAa- -3'
miRNA:   3'- -GCGAGAG--GCG-GCUCUAGUCGU---------------CGUag -5'
25891 3' -56.7 NC_005337.1 + 53744 0.67 0.778594
Target:  5'- -cCUCuUCCGCCcgGAGAUgCAGCugcGCGUCg -3'
miRNA:   3'- gcGAG-AGGCGG--CUCUA-GUCGu--CGUAG- -5'
25891 3' -56.7 NC_005337.1 + 52970 0.73 0.467567
Target:  5'- cCGUUCUCCGCgGAGAUgCGGUuguugAGCGUg -3'
miRNA:   3'- -GCGAGAGGCGgCUCUA-GUCG-----UCGUAg -5'
25891 3' -56.7 NC_005337.1 + 50433 0.68 0.740052
Target:  5'- gCGCU-UCCGcCCGGGAUUcgGGCGGCGc- -3'
miRNA:   3'- -GCGAgAGGC-GGCUCUAG--UCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 49287 0.66 0.856617
Target:  5'- gCGUgaUCUCCGCgaaCGGGAUCAcguaccGCGGCGa- -3'
miRNA:   3'- -GCG--AGAGGCG---GCUCUAGU------CGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 46655 0.68 0.710101
Target:  5'- gGCUCUCCGCauaaaacuCGAGAagcUCaAGCAGauCGUCa -3'
miRNA:   3'- gCGAGAGGCG--------GCUCU---AG-UCGUC--GUAG- -5'
25891 3' -56.7 NC_005337.1 + 44572 0.66 0.823689
Target:  5'- aCGCgg-CCGCCGcGAUCGGCgucuccgccaagGGCGUg -3'
miRNA:   3'- -GCGagaGGCGGCuCUAGUCG------------UCGUAg -5'
25891 3' -56.7 NC_005337.1 + 42395 0.74 0.394589
Target:  5'- gGCcuaaCUCCGCCGAGAUCcucacgaAGCGGC-UCa -3'
miRNA:   3'- gCGa---GAGGCGGCUCUAG-------UCGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 39828 0.67 0.803434
Target:  5'- aGCUgCUCCGCCGcacggaGGAguacgucgacggcuUCGGCAucaGCGUCu -3'
miRNA:   3'- gCGA-GAGGCGGC------UCU--------------AGUCGU---CGUAG- -5'
25891 3' -56.7 NC_005337.1 + 38685 0.7 0.638276
Target:  5'- aCGCUgUUCGCCGccuGGuGUCGGCGGCGg- -3'
miRNA:   3'- -GCGAgAGGCGGC---UC-UAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 37158 0.68 0.749856
Target:  5'- aGCUCcgccaCCGCCGAGcgCcacuGCGGCAc- -3'
miRNA:   3'- gCGAGa----GGCGGCUCuaGu---CGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 36791 0.69 0.68978
Target:  5'- uGCgacCCGCUGGGcGUCAGCcGCGUCg -3'
miRNA:   3'- gCGagaGGCGGCUC-UAGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 32895 0.71 0.576381
Target:  5'- gGCUgUCgGCCGGGAUCAGCgAGgGg- -3'
miRNA:   3'- gCGAgAGgCGGCUCUAGUCG-UCgUag -5'
25891 3' -56.7 NC_005337.1 + 30709 0.67 0.778594
Target:  5'- uCGCggaaCUCCGCCGGGAagUC-GCAGaaGUCg -3'
miRNA:   3'- -GCGa---GAGGCGGCUCU--AGuCGUCg-UAG- -5'
25891 3' -56.7 NC_005337.1 + 29511 0.67 0.814992
Target:  5'- cCGCg--CCGUgCGAGAUCAuGCAGUcgCg -3'
miRNA:   3'- -GCGagaGGCG-GCUCUAGU-CGUCGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.