Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25891 | 3' | -56.7 | NC_005337.1 | + | 133467 | 0.68 | 0.743986 |
Target: 5'- gCGCggacggCUCCGCgGAGcuggucugccucgucGUCGGCGGCGc- -3' miRNA: 3'- -GCGa-----GAGGCGgCUC---------------UAGUCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 130087 | 0.69 | 0.69997 |
Target: 5'- aCGCaggCCguugagGCCGGGGUCAGCGacGCAUCa -3' miRNA: 3'- -GCGagaGG------CGGCUCUAGUCGU--CGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 28365 | 0.68 | 0.710101 |
Target: 5'- uCGUUgUCCGCCaGGGUCAGCcGCcccuuGUCg -3' miRNA: 3'- -GCGAgAGGCGGcUCUAGUCGuCG-----UAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 7393 | 0.68 | 0.710101 |
Target: 5'- gCGUUCcUCGCCacgagcacgcaGAGGUgCAGCGGCGUCc -3' miRNA: 3'- -GCGAGaGGCGG-----------CUCUA-GUCGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 46655 | 0.68 | 0.710101 |
Target: 5'- gGCUCUCCGCauaaaacuCGAGAagcUCaAGCAGauCGUCa -3' miRNA: 3'- gCGAGAGGCG--------GCUCU---AG-UCGUC--GUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 83163 | 0.68 | 0.730152 |
Target: 5'- uCGCcCUcCCGCCG-GAUCuGCAGCu-- -3' miRNA: 3'- -GCGaGA-GGCGGCuCUAGuCGUCGuag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 55267 | 0.68 | 0.734123 |
Target: 5'- uCGCUCUCggUGCgCGAGGUCGGCAuccccgacuacauccGCAa- -3' miRNA: 3'- -GCGAGAG--GCG-GCUCUAGUCGU---------------CGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 50433 | 0.68 | 0.740052 |
Target: 5'- gCGCU-UCCGcCCGGGAUUcgGGCGGCGc- -3' miRNA: 3'- -GCGAgAGGC-GGCUCUAG--UCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 120212 | 0.68 | 0.740052 |
Target: 5'- aGCaCcUCGCCGAGG-CGGaCAGCAUCg -3' miRNA: 3'- gCGaGaGGCGGCUCUaGUC-GUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 36791 | 0.69 | 0.68978 |
Target: 5'- uGCgacCCGCUGGGcGUCAGCcGCGUCg -3' miRNA: 3'- gCGagaGGCGGCUC-UAGUCGuCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 74210 | 0.69 | 0.679541 |
Target: 5'- uGUUCUCCGCCGuGcuugCGGCGGaugAUCg -3' miRNA: 3'- gCGAGAGGCGGCuCua--GUCGUCg--UAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 8451 | 0.7 | 0.648621 |
Target: 5'- cCGCUUcaCCGCCGAuGUgCGGCAGCAg- -3' miRNA: 3'- -GCGAGa-GGCGGCUcUA-GUCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 91086 | 0.78 | 0.243262 |
Target: 5'- gGCUCUUgGCCGGGGcgaUCAGCGGCGa- -3' miRNA: 3'- gCGAGAGgCGGCUCU---AGUCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 52970 | 0.73 | 0.467567 |
Target: 5'- cCGUUCUCCGCgGAGAUgCGGUuguugAGCGUg -3' miRNA: 3'- -GCGAGAGGCGgCUCUA-GUCG-----UCGUAg -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 91215 | 0.73 | 0.477057 |
Target: 5'- gCGCg--CCGCCGGuGGUCAGC-GCGUCc -3' miRNA: 3'- -GCGagaGGCGGCU-CUAGUCGuCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 21931 | 0.72 | 0.51592 |
Target: 5'- cCGCgcgCUCCGCCGAGcUC-GCGGaGUCa -3' miRNA: 3'- -GCGa--GAGGCGGCUCuAGuCGUCgUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 114483 | 0.71 | 0.555997 |
Target: 5'- cCGCcCUacgacgaCGCCGAGucCAGCGGCGUCg -3' miRNA: 3'- -GCGaGAg------GCGGCUCuaGUCGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 104719 | 0.7 | 0.627926 |
Target: 5'- gGC-CgCCGCCGcGG-CGGCGGCAUCa -3' miRNA: 3'- gCGaGaGGCGGCuCUaGUCGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 38685 | 0.7 | 0.638276 |
Target: 5'- aCGCUgUUCGCCGccuGGuGUCGGCGGCGg- -3' miRNA: 3'- -GCGAgAGGCGGC---UC-UAGUCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 14198 | 0.7 | 0.648621 |
Target: 5'- uCGCaggggUCCGCCGAGA-UAGCGGCGg- -3' miRNA: 3'- -GCGag---AGGCGGCUCUaGUCGUCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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