miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25891 3' -56.7 NC_005337.1 + 133467 0.68 0.743986
Target:  5'- gCGCggacggCUCCGCgGAGcuggucugccucgucGUCGGCGGCGc- -3'
miRNA:   3'- -GCGa-----GAGGCGgCUC---------------UAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 130087 0.69 0.69997
Target:  5'- aCGCaggCCguugagGCCGGGGUCAGCGacGCAUCa -3'
miRNA:   3'- -GCGagaGG------CGGCUCUAGUCGU--CGUAG- -5'
25891 3' -56.7 NC_005337.1 + 28365 0.68 0.710101
Target:  5'- uCGUUgUCCGCCaGGGUCAGCcGCcccuuGUCg -3'
miRNA:   3'- -GCGAgAGGCGGcUCUAGUCGuCG-----UAG- -5'
25891 3' -56.7 NC_005337.1 + 7393 0.68 0.710101
Target:  5'- gCGUUCcUCGCCacgagcacgcaGAGGUgCAGCGGCGUCc -3'
miRNA:   3'- -GCGAGaGGCGG-----------CUCUA-GUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 46655 0.68 0.710101
Target:  5'- gGCUCUCCGCauaaaacuCGAGAagcUCaAGCAGauCGUCa -3'
miRNA:   3'- gCGAGAGGCG--------GCUCU---AG-UCGUC--GUAG- -5'
25891 3' -56.7 NC_005337.1 + 83163 0.68 0.730152
Target:  5'- uCGCcCUcCCGCCG-GAUCuGCAGCu-- -3'
miRNA:   3'- -GCGaGA-GGCGGCuCUAGuCGUCGuag -5'
25891 3' -56.7 NC_005337.1 + 55267 0.68 0.734123
Target:  5'- uCGCUCUCggUGCgCGAGGUCGGCAuccccgacuacauccGCAa- -3'
miRNA:   3'- -GCGAGAG--GCG-GCUCUAGUCGU---------------CGUag -5'
25891 3' -56.7 NC_005337.1 + 50433 0.68 0.740052
Target:  5'- gCGCU-UCCGcCCGGGAUUcgGGCGGCGc- -3'
miRNA:   3'- -GCGAgAGGC-GGCUCUAG--UCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 120212 0.68 0.740052
Target:  5'- aGCaCcUCGCCGAGG-CGGaCAGCAUCg -3'
miRNA:   3'- gCGaGaGGCGGCUCUaGUC-GUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 36791 0.69 0.68978
Target:  5'- uGCgacCCGCUGGGcGUCAGCcGCGUCg -3'
miRNA:   3'- gCGagaGGCGGCUC-UAGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 74210 0.69 0.679541
Target:  5'- uGUUCUCCGCCGuGcuugCGGCGGaugAUCg -3'
miRNA:   3'- gCGAGAGGCGGCuCua--GUCGUCg--UAG- -5'
25891 3' -56.7 NC_005337.1 + 8451 0.7 0.648621
Target:  5'- cCGCUUcaCCGCCGAuGUgCGGCAGCAg- -3'
miRNA:   3'- -GCGAGa-GGCGGCUcUA-GUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 91086 0.78 0.243262
Target:  5'- gGCUCUUgGCCGGGGcgaUCAGCGGCGa- -3'
miRNA:   3'- gCGAGAGgCGGCUCU---AGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 52970 0.73 0.467567
Target:  5'- cCGUUCUCCGCgGAGAUgCGGUuguugAGCGUg -3'
miRNA:   3'- -GCGAGAGGCGgCUCUA-GUCG-----UCGUAg -5'
25891 3' -56.7 NC_005337.1 + 91215 0.73 0.477057
Target:  5'- gCGCg--CCGCCGGuGGUCAGC-GCGUCc -3'
miRNA:   3'- -GCGagaGGCGGCU-CUAGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 21931 0.72 0.51592
Target:  5'- cCGCgcgCUCCGCCGAGcUC-GCGGaGUCa -3'
miRNA:   3'- -GCGa--GAGGCGGCUCuAGuCGUCgUAG- -5'
25891 3' -56.7 NC_005337.1 + 114483 0.71 0.555997
Target:  5'- cCGCcCUacgacgaCGCCGAGucCAGCGGCGUCg -3'
miRNA:   3'- -GCGaGAg------GCGGCUCuaGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 104719 0.7 0.627926
Target:  5'- gGC-CgCCGCCGcGG-CGGCGGCAUCa -3'
miRNA:   3'- gCGaGaGGCGGCuCUaGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 38685 0.7 0.638276
Target:  5'- aCGCUgUUCGCCGccuGGuGUCGGCGGCGg- -3'
miRNA:   3'- -GCGAgAGGCGGC---UC-UAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 14198 0.7 0.648621
Target:  5'- uCGCaggggUCCGCCGAGA-UAGCGGCGg- -3'
miRNA:   3'- -GCGag---AGGCGGCUCUaGUCGUCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.