Results 61 - 73 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25891 | 3' | -56.7 | NC_005337.1 | + | 42395 | 0.74 | 0.394589 |
Target: 5'- gGCcuaaCUCCGCCGAGAUCcucacgaAGCGGC-UCa -3' miRNA: 3'- gCGa---GAGGCGGCUCUAG-------UCGUCGuAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 100752 | 0.77 | 0.281074 |
Target: 5'- gCGCUCUCCGCCGcGAUCGaccGCuGCAa- -3' miRNA: 3'- -GCGAGAGGCGGCuCUAGU---CGuCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 94780 | 0.7 | 0.607244 |
Target: 5'- aGCa--CCGCCGGucGAUCGGCGGCGUa -3' miRNA: 3'- gCGagaGGCGGCU--CUAGUCGUCGUAg -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 1140 | 0.7 | 0.638276 |
Target: 5'- gCGCgaccagCUCCGCgGGGAUCA-CAGC-UCg -3' miRNA: 3'- -GCGa-----GAGGCGgCUCUAGUcGUCGuAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 103095 | 0.69 | 0.69997 |
Target: 5'- gGCUCgUCgGCCGAcAUCGaccucccggaguGCGGCAUCg -3' miRNA: 3'- gCGAG-AGgCGGCUcUAGU------------CGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 68195 | 0.69 | 0.69997 |
Target: 5'- gCGC-CUCCGCCGccg-CGGCcGCGUCc -3' miRNA: 3'- -GCGaGAGGCGGCucuaGUCGuCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 123096 | 0.69 | 0.68978 |
Target: 5'- aGCUCUCCGCCGuauUCgAGCGGgAc- -3' miRNA: 3'- gCGAGAGGCGGCucuAG-UCGUCgUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 106644 | 0.69 | 0.679541 |
Target: 5'- gCGCgCUCCGCCaAGAUCccggagcgcgAGCGGCGg- -3' miRNA: 3'- -GCGaGAGGCGGcUCUAG----------UCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 115867 | 0.69 | 0.669262 |
Target: 5'- uCGUUCUcgCCGuCCGAGAUgGucgaguaccGCGGCAUCg -3' miRNA: 3'- -GCGAGA--GGC-GGCUCUAgU---------CGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 86711 | 0.69 | 0.658953 |
Target: 5'- gGCUCgUCgGCgGuGGUCAgucGCGGCAUCa -3' miRNA: 3'- gCGAG-AGgCGgCuCUAGU---CGUCGUAG- -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 104633 | 0.7 | 0.648621 |
Target: 5'- gCGCaUCUCgGagcCCGuGAUCAGCAGCGa- -3' miRNA: 3'- -GCG-AGAGgC---GGCuCUAGUCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 110744 | 0.7 | 0.638276 |
Target: 5'- gGC-C-CCGCCGGGGUCcgcgAGCAGCGa- -3' miRNA: 3'- gCGaGaGGCGGCUCUAG----UCGUCGUag -5' |
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25891 | 3' | -56.7 | NC_005337.1 | + | 81308 | 0.77 | 0.274463 |
Target: 5'- cCGCaUCUCCGCgGAGAaCGGCGGCGc- -3' miRNA: 3'- -GCG-AGAGGCGgCUCUaGUCGUCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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