miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25891 3' -56.7 NC_005337.1 + 81308 0.77 0.274463
Target:  5'- cCGCaUCUCCGCgGAGAaCGGCGGCGc- -3'
miRNA:   3'- -GCG-AGAGGCGgCUCUaGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 68195 0.69 0.69997
Target:  5'- gCGC-CUCCGCCGccg-CGGCcGCGUCc -3'
miRNA:   3'- -GCGaGAGGCGGCucuaGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 61715 0.68 0.709091
Target:  5'- aGUUCUCCuccuggaGCCGGGAcaugCGGCAGUAg- -3'
miRNA:   3'- gCGAGAGG-------CGGCUCUa---GUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 114679 0.66 0.856617
Target:  5'- cCGcCUCUCCGCUggacgcagugGAGAUCcucgcGCGGC-UCa -3'
miRNA:   3'- -GC-GAGAGGCGG----------CUCUAGu----CGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 114116 0.72 0.506078
Target:  5'- gGC-CUCCGCCGcGGccugCGGCAGCGUg -3'
miRNA:   3'- gCGaGAGGCGGCuCUa---GUCGUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 105600 0.71 0.545883
Target:  5'- gGgaCUUCGCCGAGGUCGGggcCGGCGUg -3'
miRNA:   3'- gCgaGAGGCGGCUCUAGUC---GUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 93595 0.71 0.576381
Target:  5'- gGCUCUCCGCCGAGGaCAuGgAcGCgAUCa -3'
miRNA:   3'- gCGAGAGGCGGCUCUaGU-CgU-CG-UAG- -5'
25891 3' -56.7 NC_005337.1 + 68455 0.7 0.607244
Target:  5'- aGCUCcagCGCCGGGAUCuccugcuucuGCAGCAUg -3'
miRNA:   3'- gCGAGag-GCGGCUCUAGu---------CGUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 110744 0.7 0.638276
Target:  5'- gGC-C-CCGCCGGGGUCcgcgAGCAGCGa- -3'
miRNA:   3'- gCGaGaGGCGGCUCUAG----UCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 123096 0.69 0.68978
Target:  5'- aGCUCUCCGCCGuauUCgAGCGGgAc- -3'
miRNA:   3'- gCGAGAGGCGGCucuAG-UCGUCgUag -5'
25891 3' -56.7 NC_005337.1 + 86711 0.69 0.658953
Target:  5'- gGCUCgUCgGCgGuGGUCAgucGCGGCAUCa -3'
miRNA:   3'- gCGAG-AGgCGgCuCUAGU---CGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 1140 0.7 0.638276
Target:  5'- gCGCgaccagCUCCGCgGGGAUCA-CAGC-UCg -3'
miRNA:   3'- -GCGa-----GAGGCGgCUCUAGUcGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 100752 0.77 0.281074
Target:  5'- gCGCUCUCCGCCGcGAUCGaccGCuGCAa- -3'
miRNA:   3'- -GCGAGAGGCGGCuCUAGU---CGuCGUag -5'
25891 3' -56.7 NC_005337.1 + 115867 0.69 0.669262
Target:  5'- uCGUUCUcgCCGuCCGAGAUgGucgaguaccGCGGCAUCg -3'
miRNA:   3'- -GCGAGA--GGC-GGCUCUAgU---------CGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 42395 0.74 0.394589
Target:  5'- gGCcuaaCUCCGCCGAGAUCcucacgaAGCGGC-UCa -3'
miRNA:   3'- gCGa---GAGGCGGCUCUAG-------UCGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 94780 0.7 0.607244
Target:  5'- aGCa--CCGCCGGucGAUCGGCGGCGUa -3'
miRNA:   3'- gCGagaGGCGGCU--CUAGUCGUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 106644 0.69 0.679541
Target:  5'- gCGCgCUCCGCCaAGAUCccggagcgcgAGCGGCGg- -3'
miRNA:   3'- -GCGaGAGGCGGcUCUAG----------UCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 103095 0.69 0.69997
Target:  5'- gGCUCgUCgGCCGAcAUCGaccucccggaguGCGGCAUCg -3'
miRNA:   3'- gCGAG-AGgCGGCUcUAGU------------CGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 111532 0.72 0.496317
Target:  5'- cCGCgCUCCGCCGcgugcaggucgGGGUCGGCGGUg-- -3'
miRNA:   3'- -GCGaGAGGCGGC-----------UCUAGUCGUCGuag -5'
25891 3' -56.7 NC_005337.1 + 32895 0.71 0.576381
Target:  5'- gGCUgUCgGCCGGGAUCAGCgAGgGg- -3'
miRNA:   3'- gCGAgAGgCGGCUCUAGUCG-UCgUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.