miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25891 3' -56.7 NC_005337.1 + 133467 0.68 0.743986
Target:  5'- gCGCggacggCUCCGCgGAGcuggucugccucgucGUCGGCGGCGc- -3'
miRNA:   3'- -GCGa-----GAGGCGgCUC---------------UAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 110744 0.7 0.638276
Target:  5'- gGC-C-CCGCCGGGGUCcgcgAGCAGCGa- -3'
miRNA:   3'- gCGaGaGGCGGCUCUAG----UCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 3779 0.66 0.832208
Target:  5'- uGCUUUCCGCaCGAgcgacgcaGAUCGGCgacgGGCAc- -3'
miRNA:   3'- gCGAGAGGCG-GCU--------CUAGUCG----UCGUag -5'
25891 3' -56.7 NC_005337.1 + 58423 0.67 0.778594
Target:  5'- aGCUCUUccggagCGgCGAGAcgaUCAGCGGCGa- -3'
miRNA:   3'- gCGAGAG------GCgGCUCU---AGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 61715 0.68 0.709091
Target:  5'- aGUUCUCCuccuggaGCCGGGAcaugCGGCAGUAg- -3'
miRNA:   3'- gCGAGAGG-------CGGCUCUa---GUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 1140 0.7 0.638276
Target:  5'- gCGCgaccagCUCCGCgGGGAUCA-CAGC-UCg -3'
miRNA:   3'- -GCGa-----GAGGCGgCUCUAGUcGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 30709 0.67 0.778594
Target:  5'- uCGCggaaCUCCGCCGGGAagUC-GCAGaaGUCg -3'
miRNA:   3'- -GCGa---GAGGCGGCUCU--AGuCGUCg-UAG- -5'
25891 3' -56.7 NC_005337.1 + 94780 0.7 0.607244
Target:  5'- aGCa--CCGCCGGucGAUCGGCGGCGUa -3'
miRNA:   3'- gCGagaGGCGGCU--CUAGUCGUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 68455 0.7 0.607244
Target:  5'- aGCUCcagCGCCGGGAUCuccugcuucuGCAGCAUg -3'
miRNA:   3'- gCGAGag-GCGGCUCUAGu---------CGUCGUAg -5'
25891 3' -56.7 NC_005337.1 + 123096 0.69 0.68978
Target:  5'- aGCUCUCCGCCGuauUCgAGCGGgAc- -3'
miRNA:   3'- gCGAGAGGCGGCucuAG-UCGUCgUag -5'
25891 3' -56.7 NC_005337.1 + 4750 0.68 0.710101
Target:  5'- aCGCUCgcgCCGCgCGcGAgCAGC-GCGUCg -3'
miRNA:   3'- -GCGAGa--GGCG-GCuCUaGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 37158 0.68 0.749856
Target:  5'- aGCUCcgccaCCGCCGAGcgCcacuGCGGCAc- -3'
miRNA:   3'- gCGAGa----GGCGGCUCuaGu---CGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 103095 0.69 0.69997
Target:  5'- gGCUCgUCgGCCGAcAUCGaccucccggaguGCGGCAUCg -3'
miRNA:   3'- gCGAG-AGgCGGCUcUAGU------------CGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 68195 0.69 0.69997
Target:  5'- gCGC-CUCCGCCGccg-CGGCcGCGUCc -3'
miRNA:   3'- -GCGaGAGGCGGCucuaGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 106644 0.69 0.679541
Target:  5'- gCGCgCUCCGCCaAGAUCccggagcgcgAGCGGCGg- -3'
miRNA:   3'- -GCGaGAGGCGGcUCUAG----------UCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 104633 0.7 0.648621
Target:  5'- gCGCaUCUCgGagcCCGuGAUCAGCAGCGa- -3'
miRNA:   3'- -GCG-AGAGgC---GGCuCUAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 49287 0.66 0.856617
Target:  5'- gCGUgaUCUCCGCgaaCGGGAUCAcguaccGCGGCGa- -3'
miRNA:   3'- -GCG--AGAGGCG---GCUCUAGU------CGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 114177 0.66 0.832208
Target:  5'- gCGCUCU-CGCUGAuGG-CGGaCGGCAUCc -3'
miRNA:   3'- -GCGAGAgGCGGCU-CUaGUC-GUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 16502 0.66 0.823689
Target:  5'- aGUUCUcCCGcCCGuAGAaguUUAGCGGCGUUu -3'
miRNA:   3'- gCGAGA-GGC-GGC-UCU---AGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 3093 0.67 0.796187
Target:  5'- gCGCUggcccucCUCCGCgCGc-AUCAGCAGCAg- -3'
miRNA:   3'- -GCGA-------GAGGCG-GCucUAGUCGUCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.