miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25891 3' -56.7 NC_005337.1 + 74210 0.69 0.679541
Target:  5'- uGUUCUCCGCCGuGcuugCGGCGGaugAUCg -3'
miRNA:   3'- gCGAGAGGCGGCuCua--GUCGUCg--UAG- -5'
25891 3' -56.7 NC_005337.1 + 52970 0.73 0.467567
Target:  5'- cCGUUCUCCGCgGAGAUgCGGUuguugAGCGUg -3'
miRNA:   3'- -GCGAGAGGCGgCUCUA-GUCG-----UCGUAg -5'
25891 3' -56.7 NC_005337.1 + 104719 0.7 0.627926
Target:  5'- gGC-CgCCGCCGcGG-CGGCGGCAUCa -3'
miRNA:   3'- gCGaGaGGCGGCuCUaGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 8451 0.7 0.648621
Target:  5'- cCGCUUcaCCGCCGAuGUgCGGCAGCAg- -3'
miRNA:   3'- -GCGAGa-GGCGGCUcUA-GUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 114483 0.71 0.555997
Target:  5'- cCGCcCUacgacgaCGCCGAGucCAGCGGCGUCg -3'
miRNA:   3'- -GCGaGAg------GCGGCUCuaGUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 16705 0.66 0.84054
Target:  5'- gGC-CUCCgcuGCCGGGugacgcGUCAGUAGCAg- -3'
miRNA:   3'- gCGaGAGG---CGGCUC------UAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 36791 0.69 0.68978
Target:  5'- uGCgacCCGCUGGGcGUCAGCcGCGUCg -3'
miRNA:   3'- gCGagaGGCGGCUC-UAGUCGuCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 130087 0.69 0.69997
Target:  5'- aCGCaggCCguugagGCCGGGGUCAGCGacGCAUCa -3'
miRNA:   3'- -GCGagaGG------CGGCUCUAGUCGU--CGUAG- -5'
25891 3' -56.7 NC_005337.1 + 28365 0.68 0.710101
Target:  5'- uCGUUgUCCGCCaGGGUCAGCcGCcccuuGUCg -3'
miRNA:   3'- -GCGAgAGGCGGcUCUAGUCGuCG-----UAG- -5'
25891 3' -56.7 NC_005337.1 + 44572 0.66 0.823689
Target:  5'- aCGCgg-CCGCCGcGAUCGGCgucuccgccaagGGCGUg -3'
miRNA:   3'- -GCGagaGGCGGCuCUAGUCG------------UCGUAg -5'
25891 3' -56.7 NC_005337.1 + 39828 0.67 0.803434
Target:  5'- aGCUgCUCCGCCGcacggaGGAguacgucgacggcuUCGGCAucaGCGUCu -3'
miRNA:   3'- gCGA-GAGGCGGC------UCU--------------AGUCGU---CGUAG- -5'
25891 3' -56.7 NC_005337.1 + 72297 0.67 0.791608
Target:  5'- uGCUCUCugcguCGCCGAucacGAacacgcccaucacgcUgAGCAGCAUCa -3'
miRNA:   3'- gCGAGAG-----GCGGCU----CU---------------AgUCGUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 77966 0.67 0.787918
Target:  5'- gCGCUC-CUG-CGAGAUCucgAGCAGCGg- -3'
miRNA:   3'- -GCGAGaGGCgGCUCUAG---UCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 103868 0.67 0.787918
Target:  5'- gGCagUUCGCgGAGcgCGGCGGCcUCg -3'
miRNA:   3'- gCGagAGGCGgCUCuaGUCGUCGuAG- -5'
25891 3' -56.7 NC_005337.1 + 1110 0.67 0.769137
Target:  5'- gCGC-CgCCGCCGGGAgCAGCcGCAg- -3'
miRNA:   3'- -GCGaGaGGCGGCUCUaGUCGuCGUag -5'
25891 3' -56.7 NC_005337.1 + 53744 0.67 0.778594
Target:  5'- -cCUCuUCCGCCcgGAGAUgCAGCugcGCGUCg -3'
miRNA:   3'- gcGAG-AGGCGG--CUCUA-GUCGu--CGUAG- -5'
25891 3' -56.7 NC_005337.1 + 109753 0.68 0.749856
Target:  5'- gCGCaUCUCCGCCGGcuUgGGCAcgggccgagcGCGUCg -3'
miRNA:   3'- -GCG-AGAGGCGGCUcuAgUCGU----------CGUAG- -5'
25891 3' -56.7 NC_005337.1 + 133467 0.68 0.743986
Target:  5'- gCGCggacggCUCCGCgGAGcuggucugccucgucGUCGGCGGCGc- -3'
miRNA:   3'- -GCGa-----GAGGCGgCUC---------------UAGUCGUCGUag -5'
25891 3' -56.7 NC_005337.1 + 120212 0.68 0.740052
Target:  5'- aGCaCcUCGCCGAGG-CGGaCAGCAUCg -3'
miRNA:   3'- gCGaGaGGCGGCUCUaGUC-GUCGUAG- -5'
25891 3' -56.7 NC_005337.1 + 7393 0.68 0.710101
Target:  5'- gCGUUCcUCGCCacgagcacgcaGAGGUgCAGCGGCGUCc -3'
miRNA:   3'- -GCGAGaGGCGG-----------CUCUA-GUCGUCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.