miRNA display CGI


Results 21 - 40 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25897 3' -65.5 NC_005337.1 + 29692 0.66 0.4817
Target:  5'- uCGCCGC-CGaCGaCCGGaCGgaCGCGCGAGn -3'
miRNA:   3'- -GCGGUGcGC-GC-GGCC-GC--GCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 39584 0.66 0.4817
Target:  5'- gGCCGCGUGUucgugcccgaGCCcuucGGCGgGCGgGAGc -3'
miRNA:   3'- gCGGUGCGCG----------CGG----CCGCgCGCgCUCu -5'
25897 3' -65.5 NC_005337.1 + 65310 0.66 0.4817
Target:  5'- aGUCGgGCGacuggaagggcaCGCCGGUGCcgccGCGCGGGu -3'
miRNA:   3'- gCGGUgCGC------------GCGGCCGCG----CGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 95971 0.66 0.4817
Target:  5'- gCGCUcgacGCGCGCGCCccuccaccGGUGCuugacgaGCGGGAa -3'
miRNA:   3'- -GCGG----UGCGCGCGG--------CCGCGcg-----CGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 65954 0.66 0.4817
Target:  5'- gGCaCGCGCGUGCCgcccuccucgGGCaCGCGCGu-- -3'
miRNA:   3'- gCG-GUGCGCGCGG----------CCGcGCGCGCucu -5'
25897 3' -65.5 NC_005337.1 + 64940 0.66 0.4817
Target:  5'- ---aGCGCGCGCCGugauccGCGUGUGCaAGAa -3'
miRNA:   3'- gcggUGCGCGCGGC------CGCGCGCGcUCU- -5'
25897 3' -65.5 NC_005337.1 + 30032 0.66 0.480808
Target:  5'- aCGCgAcCGUGCccuucugGCUGGUGCGCGUGGuGAa -3'
miRNA:   3'- -GCGgU-GCGCG-------CGGCCGCGCGCGCU-CU- -5'
25897 3' -65.5 NC_005337.1 + 17668 0.66 0.480808
Target:  5'- aCGuCCACGCGcCGCaccgCGGCGUugauggcgggcauGgGCGAGGu -3'
miRNA:   3'- -GC-GGUGCGC-GCG----GCCGCG-------------CgCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 102821 0.66 0.480808
Target:  5'- uCGCCugggcaacaagACGCGCGUCauggucgGGcCGCGCGCcAGGa -3'
miRNA:   3'- -GCGG-----------UGCGCGCGG-------CC-GCGCGCGcUCU- -5'
25897 3' -65.5 NC_005337.1 + 32263 0.66 0.479027
Target:  5'- aCGCC-CGCGCGCUgcacgauguacucgGGCGUGaacucgGcCGAGAg -3'
miRNA:   3'- -GCGGuGCGCGCGG--------------CCGCGCg-----C-GCUCU- -5'
25897 3' -65.5 NC_005337.1 + 104574 0.66 0.476361
Target:  5'- gCGCCuCGCGCGUccguccggucguCGGCGgCGagcauacggcgccacCGCGGGAg -3'
miRNA:   3'- -GCGGuGCGCGCG------------GCCGC-GC---------------GCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 129784 0.66 0.476361
Target:  5'- aCGCCGCugcaCGUGCUGGCGaugcagagcaccugcCGCGCGucGAu -3'
miRNA:   3'- -GCGGUGc---GCGCGGCCGC---------------GCGCGCu-CU- -5'
25897 3' -65.5 NC_005337.1 + 84078 0.66 0.472817
Target:  5'- uGCagACGCGCGCCGcagaGCGCggacacggGCGCGGu- -3'
miRNA:   3'- gCGg-UGCGCGCGGC----CGCG--------CGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 33676 0.66 0.472817
Target:  5'- aGCgAgGCGCcgagGCCGGCGgGCGCc--- -3'
miRNA:   3'- gCGgUgCGCG----CGGCCGCgCGCGcucu -5'
25897 3' -65.5 NC_005337.1 + 133368 0.66 0.472817
Target:  5'- cCGCCGC-CGCGCuCGuCGCGCuCGGGc -3'
miRNA:   3'- -GCGGUGcGCGCG-GCcGCGCGcGCUCu -5'
25897 3' -65.5 NC_005337.1 + 124317 0.66 0.472817
Target:  5'- cCGUCGCG-GCGCaGGCGCucauggacgcgGCGCGAu- -3'
miRNA:   3'- -GCGGUGCgCGCGgCCGCG-----------CGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 80071 0.66 0.472817
Target:  5'- uGCgACGCGaacccggacgaCGuCCGGUGCGCGUGccuGAa -3'
miRNA:   3'- gCGgUGCGC-----------GC-GGCCGCGCGCGCu--CU- -5'
25897 3' -65.5 NC_005337.1 + 19947 0.66 0.472817
Target:  5'- uGCUcaGCGaagaggcucCGCaCCGGCGC-CGCGAGAg -3'
miRNA:   3'- gCGG--UGC---------GCGcGGCCGCGcGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 133368 0.66 0.472817
Target:  5'- cCGCCGC-CGCGCuCGuCGCGCuCGGGc -3'
miRNA:   3'- -GCGGUGcGCGCG-GCcGCGCGcGCUCu -5'
25897 3' -65.5 NC_005337.1 + 100276 0.66 0.472817
Target:  5'- -aCCGCGCGCGCaagaGGCGgucCGUGCGc-- -3'
miRNA:   3'- gcGGUGCGCGCGg---CCGC---GCGCGCucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.