miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25897 5' -52.6 NC_005337.1 + 14522 0.67 0.925312
Target:  5'- aUCUugcUCGCGUGCuGCuGGCGCAccaUGUc -3'
miRNA:   3'- aAGA---AGCGCGCGuUGuUCGCGU---ACAu -5'
25897 5' -52.6 NC_005337.1 + 128698 0.67 0.919457
Target:  5'- ----aCGCGCGCuGGCGAcgcggcuggcGCGCGUGUAc -3'
miRNA:   3'- aagaaGCGCGCG-UUGUU----------CGCGUACAU- -5'
25897 5' -52.6 NC_005337.1 + 74930 0.67 0.919457
Target:  5'- -cCUUCGCGCGCG-CGGccGCGCGgaugcgGUGc -3'
miRNA:   3'- aaGAAGCGCGCGUuGUU--CGCGUa-----CAU- -5'
25897 5' -52.6 NC_005337.1 + 39938 0.67 0.919457
Target:  5'- ----aCGUGCGCGGCGGGCGCc---- -3'
miRNA:   3'- aagaaGCGCGCGUUGUUCGCGuacau -5'
25897 5' -52.6 NC_005337.1 + 48027 0.67 0.919457
Target:  5'- -cCUUCGUGCGCAACGcgacGGUGCc---- -3'
miRNA:   3'- aaGAAGCGCGCGUUGU----UCGCGuacau -5'
25897 5' -52.6 NC_005337.1 + 97074 0.67 0.919457
Target:  5'- -cCUUCaagGCGCGCcGCGGGUGCAUa-- -3'
miRNA:   3'- aaGAAG---CGCGCGuUGUUCGCGUAcau -5'
25897 5' -52.6 NC_005337.1 + 54078 0.67 0.919457
Target:  5'- uUUCUUCaGCGCccGCGGCAggAGCGCGUc-- -3'
miRNA:   3'- -AAGAAG-CGCG--CGUUGU--UCGCGUAcau -5'
25897 5' -52.6 NC_005337.1 + 11488 0.67 0.913333
Target:  5'- ----cCGCGCGCAGCAAcGCGUccAUGa- -3'
miRNA:   3'- aagaaGCGCGCGUUGUU-CGCG--UACau -5'
25897 5' -52.6 NC_005337.1 + 30385 0.67 0.913333
Target:  5'- gUCcaugUCGCGCGCGGCcagcagcuGGCGCuUGUu -3'
miRNA:   3'- aAGa---AGCGCGCGUUGu-------UCGCGuACAu -5'
25897 5' -52.6 NC_005337.1 + 115568 0.67 0.913333
Target:  5'- -----aGCGCGCGACuGGCcGCGUGUc -3'
miRNA:   3'- aagaagCGCGCGUUGuUCG-CGUACAu -5'
25897 5' -52.6 NC_005337.1 + 39223 0.67 0.913333
Target:  5'- -cCgggCGUGCGCGACAAcGCGCAg--- -3'
miRNA:   3'- aaGaa-GCGCGCGUUGUU-CGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 110348 0.67 0.906943
Target:  5'- ---gUCGCGCGCGccugccGCGGGCGCGc--- -3'
miRNA:   3'- aagaAGCGCGCGU------UGUUCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 44645 0.67 0.906943
Target:  5'- aUCgugCGC-CGCAGCGGGCGCuacGUGg -3'
miRNA:   3'- aAGaa-GCGcGCGUUGUUCGCGua-CAU- -5'
25897 5' -52.6 NC_005337.1 + 127387 0.67 0.906943
Target:  5'- -cCgcgCGCGCGCGACAuggacgGGCGCAc--- -3'
miRNA:   3'- aaGaa-GCGCGCGUUGU------UCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 81763 0.68 0.900288
Target:  5'- gUUCUccugCGCGUGCAGguuGCGCAUGg- -3'
miRNA:   3'- -AAGAa---GCGCGCGUUguuCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 67718 0.68 0.900288
Target:  5'- gUCUUCuCGgGCcGCGGGCGCAggagGUAc -3'
miRNA:   3'- aAGAAGcGCgCGuUGUUCGCGUa---CAU- -5'
25897 5' -52.6 NC_005337.1 + 79075 0.68 0.893371
Target:  5'- aUgUUCGUGUGCAggaACAcGCGCAUGc- -3'
miRNA:   3'- aAgAAGCGCGCGU---UGUuCGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 4573 0.68 0.886197
Target:  5'- aUCUgcugccgCGgGCGCGGCGAcuGCGCGUGc- -3'
miRNA:   3'- aAGAa------GCgCGCGUUGUU--CGCGUACau -5'
25897 5' -52.6 NC_005337.1 + 66954 0.68 0.886197
Target:  5'- ----gCGCGCGCGAuCGAGCGCGc--- -3'
miRNA:   3'- aagaaGCGCGCGUU-GUUCGCGUacau -5'
25897 5' -52.6 NC_005337.1 + 5399 0.68 0.886197
Target:  5'- gUCUggGUGCGCAGCAGcuGCGCAg--- -3'
miRNA:   3'- aAGAagCGCGCGUUGUU--CGCGUacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.