miRNA display CGI


Results 21 - 40 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 3' -60.3 NC_005337.1 + 4973 0.66 0.711504
Target:  5'- uGCCggaGCGCGCGCccccaccaGCauuGCCUCGAgcAGCg -3'
miRNA:   3'- -CGG---UGCGCGCGca------CG---CGGAGCU--UCGa -5'
25902 3' -60.3 NC_005337.1 + 109258 0.66 0.711504
Target:  5'- cGCCGCGCGCaCGUcgaaGCGgUg-GAAGCUg -3'
miRNA:   3'- -CGGUGCGCGcGCA----CGCgGagCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 23794 0.66 0.708568
Target:  5'- cCCGCGCGCGaCcguaaaucggcaugGUGCugcacGCCUCGGAGg- -3'
miRNA:   3'- cGGUGCGCGC-G--------------CACG-----CGGAGCUUCga -5'
25902 3' -60.3 NC_005337.1 + 576 0.66 0.701696
Target:  5'- cGCCGCGgcCGCGCGgaaGcCGCCggCGAAcGCc -3'
miRNA:   3'- -CGGUGC--GCGCGCa--C-GCGGa-GCUU-CGa -5'
25902 3' -60.3 NC_005337.1 + 40926 0.66 0.701696
Target:  5'- gGUgGCGCuGCGCGUccuGCGCgUUGAAGa- -3'
miRNA:   3'- -CGgUGCG-CGCGCA---CGCGgAGCUUCga -5'
25902 3' -60.3 NC_005337.1 + 70157 0.66 0.701696
Target:  5'- cGCCAUGCGcCGCGUGaGCC---AGGCc -3'
miRNA:   3'- -CGGUGCGC-GCGCACgCGGagcUUCGa -5'
25902 3' -60.3 NC_005337.1 + 90915 0.66 0.701696
Target:  5'- aGCaCACGCGCaGCG-GCGUCUUcccGGCg -3'
miRNA:   3'- -CG-GUGCGCG-CGCaCGCGGAGcu-UCGa -5'
25902 3' -60.3 NC_005337.1 + 76063 0.66 0.701696
Target:  5'- cGCCGCGCG-GCGguaCGCCgCGGucuGCUu -3'
miRNA:   3'- -CGGUGCGCgCGCac-GCGGaGCUu--CGA- -5'
25902 3' -60.3 NC_005337.1 + 576 0.66 0.701696
Target:  5'- cGCCGCGgcCGCGCGgaaGcCGCCggCGAAcGCc -3'
miRNA:   3'- -CGGUGC--GCGCGCa--C-GCGGa-GCUU-CGa -5'
25902 3' -60.3 NC_005337.1 + 1409 0.66 0.701696
Target:  5'- uCCGCGUGUGCGUGUuuGUCUgGGucuGCg -3'
miRNA:   3'- cGGUGCGCGCGCACG--CGGAgCUu--CGa -5'
25902 3' -60.3 NC_005337.1 + 71420 0.66 0.701696
Target:  5'- cGCUACGCGUuCcUGCGCCUgcuggUGGAGUg -3'
miRNA:   3'- -CGGUGCGCGcGcACGCGGA-----GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 128132 0.66 0.701696
Target:  5'- uGCCGCGUgaacGCGCGaaaCGCgCUCGGAcGCa -3'
miRNA:   3'- -CGGUGCG----CGCGCac-GCG-GAGCUU-CGa -5'
25902 3' -60.3 NC_005337.1 + 97060 0.66 0.701696
Target:  5'- cGCCACGCacGCGCG-GCGCg-CGGuggucuGCg -3'
miRNA:   3'- -CGGUGCG--CGCGCaCGCGgaGCUu-----CGa -5'
25902 3' -60.3 NC_005337.1 + 21814 0.66 0.701696
Target:  5'- cGCCGCagcucuuCGUGCGcGCGCUcucccggaacuUCGAGGCg -3'
miRNA:   3'- -CGGUGc------GCGCGCaCGCGG-----------AGCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 1675 0.66 0.701696
Target:  5'- cGCCGCGuCGuUGCG-GUGCCcgguggCGAAGUg -3'
miRNA:   3'- -CGGUGC-GC-GCGCaCGCGGa-----GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 115266 0.66 0.701696
Target:  5'- cGCgACGCGCGCucuggcgaacGCGUCgUCGAgcAGCUg -3'
miRNA:   3'- -CGgUGCGCGCGca--------CGCGG-AGCU--UCGA- -5'
25902 3' -60.3 NC_005337.1 + 38363 0.66 0.701696
Target:  5'- --gGCGCGCGCG-GcCGCCgUCGccGCg -3'
miRNA:   3'- cggUGCGCGCGCaC-GCGG-AGCuuCGa -5'
25902 3' -60.3 NC_005337.1 + 12079 0.66 0.700712
Target:  5'- uCCGCGCccgcggcgaugagGCGCGggcaCGCUUCGggGUUg -3'
miRNA:   3'- cGGUGCG-------------CGCGCac--GCGGAGCuuCGA- -5'
25902 3' -60.3 NC_005337.1 + 133714 0.66 0.695784
Target:  5'- gGCCGCGgcguaCGCGCGgcgguggcggagugGCGCCggcagcUGGAGCg -3'
miRNA:   3'- -CGGUGC-----GCGCGCa-------------CGCGGa-----GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 133714 0.66 0.695784
Target:  5'- gGCCGCGgcguaCGCGCGgcgguggcggagugGCGCCggcagcUGGAGCg -3'
miRNA:   3'- -CGGUGC-----GCGCGCa-------------CGCGGa-----GCUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.