miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 5' -54.9 NC_005337.1 + 673 0.67 0.887394
Target:  5'- uGCAGCagCAGcGGGCccuugCGCGCG-GAGg -3'
miRNA:   3'- -CGUCGaaGUC-CUCGa----GCGCGCaCUUg -5'
25902 5' -54.9 NC_005337.1 + 81102 0.67 0.887394
Target:  5'- aGCAGCcgCcGGAGCacgUUGCGCagGUGGAUg -3'
miRNA:   3'- -CGUCGaaGuCCUCG---AGCGCG--CACUUG- -5'
25902 5' -54.9 NC_005337.1 + 5007 0.67 0.880273
Target:  5'- aGCAGCgUCAGGucgAGCacgUCG-GCGuUGAGCa -3'
miRNA:   3'- -CGUCGaAGUCC---UCG---AGCgCGC-ACUUG- -5'
25902 5' -54.9 NC_005337.1 + 73289 0.67 0.880273
Target:  5'- cGCAGCaUC--GAGUUCuucgagucccaGCGCGUGGGCg -3'
miRNA:   3'- -CGUCGaAGucCUCGAG-----------CGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 63321 0.67 0.880273
Target:  5'- uGCAGC---AGGcGCUUGCuCGUGGACu -3'
miRNA:   3'- -CGUCGaagUCCuCGAGCGcGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 27247 0.67 0.880273
Target:  5'- aCAGCaUCuccGAGUUCGUgaGCGUGAACc -3'
miRNA:   3'- cGUCGaAGuc-CUCGAGCG--CGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 132602 0.67 0.880273
Target:  5'- uGCGGCUgcgguUCAGGuucGCgaCGCGCcugcgaguGUGAGCa -3'
miRNA:   3'- -CGUCGA-----AGUCCu--CGa-GCGCG--------CACUUG- -5'
25902 5' -54.9 NC_005337.1 + 26351 0.67 0.877359
Target:  5'- uCAGCgggcccuugaugCAGGuGCUCGCGCGgu-ACu -3'
miRNA:   3'- cGUCGaa----------GUCCuCGAGCGCGCacuUG- -5'
25902 5' -54.9 NC_005337.1 + 99586 0.67 0.87292
Target:  5'- uGCGgcGCUUCGGGcGGgaCuGCGCcGUGAGCa -3'
miRNA:   3'- -CGU--CGAAGUCC-UCgaG-CGCG-CACUUG- -5'
25902 5' -54.9 NC_005337.1 + 25447 0.67 0.87292
Target:  5'- cGCGcGCUUCGGcaccGUggacgCGUGCGUGGACg -3'
miRNA:   3'- -CGU-CGAAGUCcu--CGa----GCGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 14776 0.67 0.87292
Target:  5'- uGCuGCUUCccgugucugcuGGGcGCgguguuguucUCGUGCGUGAGCg -3'
miRNA:   3'- -CGuCGAAG-----------UCCuCG----------AGCGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 17606 0.67 0.87292
Target:  5'- -gAGCUggagCGGGAGCUgGaGCGgGAGCu -3'
miRNA:   3'- cgUCGAa---GUCCUCGAgCgCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 8720 0.67 0.872173
Target:  5'- aGCAcGCUUCugcacacgcgcacGGGGGCUCG-GUG-GAACg -3'
miRNA:   3'- -CGU-CGAAG-------------UCCUCGAGCgCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 106560 0.67 0.865342
Target:  5'- aGCGcGCUgCGGGAGaUCGUgcagccggugGCGUGGACg -3'
miRNA:   3'- -CGU-CGAaGUCCUCgAGCG----------CGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 45376 0.67 0.865342
Target:  5'- -aGGaCUUCcuGGAGgaCgGCGCGUGGACg -3'
miRNA:   3'- cgUC-GAAGu-CCUCgaG-CGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 34716 0.67 0.865342
Target:  5'- aGCAGCcgCAGGGccucCUCGCGCG--AGCa -3'
miRNA:   3'- -CGUCGaaGUCCUc---GAGCGCGCacUUG- -5'
25902 5' -54.9 NC_005337.1 + 64335 0.67 0.865342
Target:  5'- cGCcGCUUCGGGA--UC-CGCGUGAAg -3'
miRNA:   3'- -CGuCGAAGUCCUcgAGcGCGCACUUg -5'
25902 5' -54.9 NC_005337.1 + 118085 0.67 0.865342
Target:  5'- -gAGCUccUCGGG-GCUCuccgGCGCGUGGu- -3'
miRNA:   3'- cgUCGA--AGUCCuCGAG----CGCGCACUug -5'
25902 5' -54.9 NC_005337.1 + 33259 0.67 0.865342
Target:  5'- uGCAGgaU--GGAGCUcuuccCGCGCGUGGAg -3'
miRNA:   3'- -CGUCgaAguCCUCGA-----GCGCGCACUUg -5'
25902 5' -54.9 NC_005337.1 + 69287 0.67 0.865342
Target:  5'- cGCGcGCgaCGGGcAGUUCGCGCGgGAGa -3'
miRNA:   3'- -CGU-CGaaGUCC-UCGAGCGCGCaCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.