miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25906 5' -60.3 NC_005337.1 + 36518 0.66 0.741881
Target:  5'- gCGCGcGCgUGaucuCGGgggucuuccuguUCUUGGCGUCGCc -3'
miRNA:   3'- -GUGC-CGgACgu--GCC------------AGAGCCGCAGCG- -5'
25906 5' -60.3 NC_005337.1 + 6126 0.66 0.741881
Target:  5'- aGCGGCgUGCguccgaGCGcGUUUCGcGCGUucaCGCg -3'
miRNA:   3'- gUGCCGgACG------UGC-CAGAGC-CGCA---GCG- -5'
25906 5' -60.3 NC_005337.1 + 2010 0.66 0.741881
Target:  5'- cCGCaGCa-GCACGGcCaUCGGCGUCa- -3'
miRNA:   3'- -GUGcCGgaCGUGCCaG-AGCCGCAGcg -5'
25906 5' -60.3 NC_005337.1 + 68104 0.66 0.741881
Target:  5'- aCGCGGCggUGguCGuaCUCGGgGUCGCg -3'
miRNA:   3'- -GUGCCGg-ACguGCcaGAGCCgCAGCG- -5'
25906 5' -60.3 NC_005337.1 + 110213 0.66 0.741881
Target:  5'- gGCGGCCgcgGcCGCGG-C-CG-CGUCGCc -3'
miRNA:   3'- gUGCCGGa--C-GUGCCaGaGCcGCAGCG- -5'
25906 5' -60.3 NC_005337.1 + 89892 0.66 0.741881
Target:  5'- cCACaGGCCccaucccggUGgGCGG-CggGGCGUCGCc -3'
miRNA:   3'- -GUG-CCGG---------ACgUGCCaGagCCGCAGCG- -5'
25906 5' -60.3 NC_005337.1 + 92883 0.66 0.741881
Target:  5'- gACGucaucuGCCcgcGCGCGGUUgcCGGCGUCGg -3'
miRNA:   3'- gUGC------CGGa--CGUGCCAGa-GCCGCAGCg -5'
25906 5' -60.3 NC_005337.1 + 104571 0.66 0.741881
Target:  5'- uGCGcGCCUcGCGCguccguccGGUCgUCGGCGgcgaGCa -3'
miRNA:   3'- gUGC-CGGA-CGUG--------CCAG-AGCCGCag--CG- -5'
25906 5' -60.3 NC_005337.1 + 64919 0.66 0.741881
Target:  5'- aGCGGCCggcccGCGCGGgaaagCGcGCGcCGUg -3'
miRNA:   3'- gUGCCGGa----CGUGCCaga--GC-CGCaGCG- -5'
25906 5' -60.3 NC_005337.1 + 132170 0.66 0.732385
Target:  5'- aCGCGuGCCUGaC-CGGgcucgCGGCG-CGCg -3'
miRNA:   3'- -GUGC-CGGAC-GuGCCaga--GCCGCaGCG- -5'
25906 5' -60.3 NC_005337.1 + 132307 0.66 0.732385
Target:  5'- -cCGGCgUGCACGG---CGGCGgagggggCGCu -3'
miRNA:   3'- guGCCGgACGUGCCagaGCCGCa------GCG- -5'
25906 5' -60.3 NC_005337.1 + 122201 0.66 0.732385
Target:  5'- uCAUcGCCgcggGCGCGGacgUgUCGGCG-CGCa -3'
miRNA:   3'- -GUGcCGGa---CGUGCC---AgAGCCGCaGCG- -5'
25906 5' -60.3 NC_005337.1 + 74939 0.66 0.732385
Target:  5'- gCGCGGCCgcgcggaugcggUGCugGGgCUCcGCGgcuaCGCg -3'
miRNA:   3'- -GUGCCGG------------ACGugCCaGAGcCGCa---GCG- -5'
25906 5' -60.3 NC_005337.1 + 105431 0.66 0.722807
Target:  5'- gCACGGCgUacugccGCAUGGUCUCGaUGUgGUg -3'
miRNA:   3'- -GUGCCGgA------CGUGCCAGAGCcGCAgCG- -5'
25906 5' -60.3 NC_005337.1 + 98818 0.66 0.722807
Target:  5'- gCACGuaCUGgACGGUCgCGGuCG-CGCc -3'
miRNA:   3'- -GUGCcgGACgUGCCAGaGCC-GCaGCG- -5'
25906 5' -60.3 NC_005337.1 + 64114 0.66 0.722807
Target:  5'- gACGGCCUGgcucaCGCGGcgCaUGGCGUCc- -3'
miRNA:   3'- gUGCCGGAC-----GUGCCa-GaGCCGCAGcg -5'
25906 5' -60.3 NC_005337.1 + 64247 0.66 0.722807
Target:  5'- uGCGGCgCUGCgGCGG-CUCugggacccgGGCG-CGCc -3'
miRNA:   3'- gUGCCG-GACG-UGCCaGAG---------CCGCaGCG- -5'
25906 5' -60.3 NC_005337.1 + 77759 0.66 0.722807
Target:  5'- --aGGCCgucuugGCGCGGUCgCGGaCGUgGg -3'
miRNA:   3'- gugCCGGa-----CGUGCCAGaGCC-GCAgCg -5'
25906 5' -60.3 NC_005337.1 + 25096 0.66 0.722807
Target:  5'- gAUGGaCUcCGCGuUCUCGGCGUUGUa -3'
miRNA:   3'- gUGCCgGAcGUGCcAGAGCCGCAGCG- -5'
25906 5' -60.3 NC_005337.1 + 121230 0.66 0.718954
Target:  5'- aCACGGaCUGCugGGcaucgaacucgucCUCGGUgaaguagucGUCGCa -3'
miRNA:   3'- -GUGCCgGACGugCCa------------GAGCCG---------CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.