miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25909 5' -61.7 NC_005337.1 + 128296 0.66 0.662526
Target:  5'- -cGCgcgCGCCUGGCGCCGucugcucgcgcGCGgcgCGAg -3'
miRNA:   3'- caUGa--GCGGGCCGCGGC-----------CGCacaGCU- -5'
25909 5' -61.7 NC_005337.1 + 127883 0.66 0.662526
Target:  5'- gGUGg-CGCgCGGCGCCGGCGagcgcGUgCGGg -3'
miRNA:   3'- -CAUgaGCGgGCCGCGGCCGCa----CA-GCU- -5'
25909 5' -61.7 NC_005337.1 + 14150 0.66 0.662526
Target:  5'- -aGCUCGUCCuucGGCaGCCGgGCGaUGUaCGAc -3'
miRNA:   3'- caUGAGCGGG---CCG-CGGC-CGC-ACA-GCU- -5'
25909 5' -61.7 NC_005337.1 + 90099 0.66 0.662526
Target:  5'- aUGCUCuCgCCGGUcaGCUGGUcgGUGUCGAu -3'
miRNA:   3'- cAUGAGcG-GGCCG--CGGCCG--CACAGCU- -5'
25909 5' -61.7 NC_005337.1 + 7437 0.66 0.661541
Target:  5'- aUACUCGcCCCGGaaguucaCGUCGGCGUccguggCGAc -3'
miRNA:   3'- cAUGAGC-GGGCC-------GCGGCCGCAca----GCU- -5'
25909 5' -61.7 NC_005337.1 + 70527 0.66 0.658587
Target:  5'- gGUugUCGUCCGGUaCCGGUugcgagaaguccuUGUCGAa -3'
miRNA:   3'- -CAugAGCGGGCCGcGGCCGc------------ACAGCU- -5'
25909 5' -61.7 NC_005337.1 + 83906 0.66 0.652671
Target:  5'- -gGCgcccgUGCCCGGgcccgucucCGCCGGCGUGg--- -3'
miRNA:   3'- caUGa----GCGGGCC---------GCGGCCGCACagcu -5'
25909 5' -61.7 NC_005337.1 + 123131 0.66 0.652671
Target:  5'- cGUGCggCGCCCGuCGCgGuGCGUGUUc- -3'
miRNA:   3'- -CAUGa-GCGGGCcGCGgC-CGCACAGcu -5'
25909 5' -61.7 NC_005337.1 + 39531 0.66 0.642801
Target:  5'- -aGCUCGCggucguggcugCCGGCGCCccGGCGggcgcUCGGg -3'
miRNA:   3'- caUGAGCG-----------GGCCGCGG--CCGCac---AGCU- -5'
25909 5' -61.7 NC_005337.1 + 114571 0.66 0.642801
Target:  5'- -gGC-CGCagaUGGCGCCGGCGcUGUaCGc -3'
miRNA:   3'- caUGaGCGg--GCCGCGGCCGC-ACA-GCu -5'
25909 5' -61.7 NC_005337.1 + 45048 0.66 0.641813
Target:  5'- aUGCUCcgcaaGCUgGGCGCCGGCcggccggagauccGUGcCGAc -3'
miRNA:   3'- cAUGAG-----CGGgCCGCGGCCG-------------CACaGCU- -5'
25909 5' -61.7 NC_005337.1 + 123836 0.66 0.632923
Target:  5'- -gGCUcCGuCCCGGCGUucgCGGCGUG-Ca- -3'
miRNA:   3'- caUGA-GC-GGGCCGCG---GCCGCACaGcu -5'
25909 5' -61.7 NC_005337.1 + 47662 0.66 0.632923
Target:  5'- -aGCccggCGCCCGGCauGCUGGCGggcGUCc- -3'
miRNA:   3'- caUGa---GCGGGCCG--CGGCCGCa--CAGcu -5'
25909 5' -61.7 NC_005337.1 + 122189 0.66 0.623045
Target:  5'- cGUGCccgcgccucaUCGCCgCGG-GCgCGGaCGUGUCGGc -3'
miRNA:   3'- -CAUG----------AGCGG-GCCgCG-GCC-GCACAGCU- -5'
25909 5' -61.7 NC_005337.1 + 66027 0.66 0.623045
Target:  5'- -cGCUCGCCCacGCGCCGGCcg--CGc -3'
miRNA:   3'- caUGAGCGGGc-CGCGGCCGcacaGCu -5'
25909 5' -61.7 NC_005337.1 + 122400 0.66 0.623045
Target:  5'- cGUGCUgCGCggCGGCGCgCGGCGccUGUCc- -3'
miRNA:   3'- -CAUGA-GCGg-GCCGCG-GCCGC--ACAGcu -5'
25909 5' -61.7 NC_005337.1 + 30957 0.66 0.613172
Target:  5'- -aGC-CGCCCGGCGCCGaa--GUUGAu -3'
miRNA:   3'- caUGaGCGGGCCGCGGCcgcaCAGCU- -5'
25909 5' -61.7 NC_005337.1 + 88254 0.67 0.603313
Target:  5'- cGUGCgUGCCgGcGCGCCGGCGggcgccgCGGa -3'
miRNA:   3'- -CAUGaGCGGgC-CGCGGCCGCaca----GCU- -5'
25909 5' -61.7 NC_005337.1 + 128204 0.67 0.603313
Target:  5'- -gACUCGauCCUGGCGCCGcuCGUGgccgCGGg -3'
miRNA:   3'- caUGAGC--GGGCCGCGGCc-GCACa---GCU- -5'
25909 5' -61.7 NC_005337.1 + 41631 0.67 0.593475
Target:  5'- gGUGCgaCGCCCGGCGUCucCGUGgaUCGGg -3'
miRNA:   3'- -CAUGa-GCGGGCCGCGGccGCAC--AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.