miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25909 5' -61.7 NC_005337.1 + 95947 1.08 0.000981
Target:  5'- cGUACUCGCCCGGCGCCGGCGUGUCGAu -3'
miRNA:   3'- -CAUGAGCGGGCCGCGGCCGCACAGCU- -5'
25909 5' -61.7 NC_005337.1 + 10716 0.74 0.252177
Target:  5'- -gGCUCGUccuccgaCCGGCGCCGGaggaUGUCGAg -3'
miRNA:   3'- caUGAGCG-------GGCCGCGGCCgc--ACAGCU- -5'
25909 5' -61.7 NC_005337.1 + 74491 0.73 0.258664
Target:  5'- cGUGgUCGCgugCCGGCGCCGGC-UGUCc- -3'
miRNA:   3'- -CAUgAGCG---GGCCGCGGCCGcACAGcu -5'
25909 5' -61.7 NC_005337.1 + 64544 0.72 0.301139
Target:  5'- -aGCUCGCCCGGCaccgugccgcaggaGCCgcuGGCGaagcgGUCGAa -3'
miRNA:   3'- caUGAGCGGGCCG--------------CGG---CCGCa----CAGCU- -5'
25909 5' -61.7 NC_005337.1 + 65798 0.72 0.309979
Target:  5'- -cGCggCGCCCGGUG-CGGCGgcGUCGAa -3'
miRNA:   3'- caUGa-GCGGGCCGCgGCCGCa-CAGCU- -5'
25909 5' -61.7 NC_005337.1 + 37974 0.72 0.323962
Target:  5'- --cCUU-CCCGGCGCUGGCcgacGUGUCGAa -3'
miRNA:   3'- cauGAGcGGGCCGCGGCCG----CACAGCU- -5'
25909 5' -61.7 NC_005337.1 + 98720 0.71 0.368689
Target:  5'- -cGCUCGCgCGGCGCCcugcGCGUGcUGAc -3'
miRNA:   3'- caUGAGCGgGCCGCGGc---CGCACaGCU- -5'
25909 5' -61.7 NC_005337.1 + 82192 0.71 0.375753
Target:  5'- -gGC-CGCCgGGCgcgcacgGCCGGCG-GUCGAa -3'
miRNA:   3'- caUGaGCGGgCCG-------CGGCCGCaCAGCU- -5'
25909 5' -61.7 NC_005337.1 + 119839 0.7 0.38451
Target:  5'- -cGCUCGguaCCCGGCGCCagcGGCGgcacGUCGc -3'
miRNA:   3'- caUGAGC---GGGCCGCGG---CCGCa---CAGCu -5'
25909 5' -61.7 NC_005337.1 + 36653 0.7 0.400775
Target:  5'- -cACUCGUCCcggaaGGUGCCGGCGaUGgccagCGAc -3'
miRNA:   3'- caUGAGCGGG-----CCGCGGCCGC-ACa----GCU- -5'
25909 5' -61.7 NC_005337.1 + 109829 0.7 0.434584
Target:  5'- cGUACU-GCCCGGCGgCGGUcUGcgCGAa -3'
miRNA:   3'- -CAUGAgCGGGCCGCgGCCGcACa-GCU- -5'
25909 5' -61.7 NC_005337.1 + 91841 0.69 0.446802
Target:  5'- cGUACUCgGCCCGGaagcucacgccgaaGCCGGCGcacagCGAg -3'
miRNA:   3'- -CAUGAG-CGGGCCg-------------CGGCCGCaca--GCU- -5'
25909 5' -61.7 NC_005337.1 + 38693 0.69 0.452097
Target:  5'- -cGC-CGCCUGGUGUCGGCGgcggcccGUCGu -3'
miRNA:   3'- caUGaGCGGGCCGCGGCCGCa------CAGCu -5'
25909 5' -61.7 NC_005337.1 + 52089 0.69 0.452097
Target:  5'- cGUGCgCGCCCGGCGgCC-GCGUGcaggugcgCGAc -3'
miRNA:   3'- -CAUGaGCGGGCCGC-GGcCGCACa-------GCU- -5'
25909 5' -61.7 NC_005337.1 + 94848 0.69 0.460996
Target:  5'- -cGCg-GCCCgagcgGGCGcCCGcGCGUGUCGAa -3'
miRNA:   3'- caUGagCGGG-----CCGC-GGC-CGCACAGCU- -5'
25909 5' -61.7 NC_005337.1 + 105602 0.69 0.460996
Target:  5'- -gACuUCGCCgagguCGGgGCCGGCGUGcCGu -3'
miRNA:   3'- caUG-AGCGG-----GCCgCGGCCGCACaGCu -5'
25909 5' -61.7 NC_005337.1 + 88325 0.69 0.469988
Target:  5'- cGUGgaCGCCaCGcGCGCCGGCGcGcgCGAg -3'
miRNA:   3'- -CAUgaGCGG-GC-CGCGGCCGCaCa-GCU- -5'
25909 5' -61.7 NC_005337.1 + 21065 0.68 0.496551
Target:  5'- aGUACUCGCCguagucgUGGUcCCGGaCGUcGUCGAu -3'
miRNA:   3'- -CAUGAGCGG-------GCCGcGGCC-GCA-CAGCU- -5'
25909 5' -61.7 NC_005337.1 + 50239 0.68 0.525671
Target:  5'- cGUGCgCGCCUc-CGCCGGUGUGUCc- -3'
miRNA:   3'- -CAUGaGCGGGccGCGGCCGCACAGcu -5'
25909 5' -61.7 NC_005337.1 + 46681 0.68 0.525671
Target:  5'- -cAgUCGCCCgagcGGCGCCGGgagGUCGGc -3'
miRNA:   3'- caUgAGCGGG----CCGCGGCCgcaCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.