miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25912 3' -62.6 NC_005337.1 + 2178 0.65 0.625822
Target:  5'- gGCGCCGaCGCgcacggcgcaggcGGCGGACgCgGGCgcGGc -3'
miRNA:   3'- gUGCGGC-GCGa------------CCGCCUG-G-CCGauCC- -5'
25912 3' -62.6 NC_005337.1 + 80499 0.66 0.619932
Target:  5'- uGCGCCcCGCggccgggGGCGGGCacgccgaGGCccGGGg -3'
miRNA:   3'- gUGCGGcGCGa------CCGCCUGg------CCGa-UCC- -5'
25912 3' -62.6 NC_005337.1 + 573 0.66 0.619932
Target:  5'- gUACGCCGCgGCcGcGCGGaagccGCCGGCg--- -3'
miRNA:   3'- -GUGCGGCG-CGaC-CGCC-----UGGCCGaucc -5'
25912 3' -62.6 NC_005337.1 + 990 0.66 0.619932
Target:  5'- gCGCGgCGCGCggagGGCGGGCguCGcCUGGa -3'
miRNA:   3'- -GUGCgGCGCGa---CCGCCUG--GCcGAUCc -5'
25912 3' -62.6 NC_005337.1 + 124433 0.66 0.619932
Target:  5'- aACGCCGCGCgcgGGUgcgGGGCCuGCc--- -3'
miRNA:   3'- gUGCGGCGCGa--CCG---CCUGGcCGaucc -5'
25912 3' -62.6 NC_005337.1 + 1034 0.66 0.619932
Target:  5'- uCACuuUGCGCgggaGGCGGgcggcgggagGCCGGCgGGGg -3'
miRNA:   3'- -GUGcgGCGCGa---CCGCC----------UGGCCGaUCC- -5'
25912 3' -62.6 NC_005337.1 + 573 0.66 0.619932
Target:  5'- gUACGCCGCgGCcGcGCGGaagccGCCGGCg--- -3'
miRNA:   3'- -GUGCGGCG-CGaC-CGCC-----UGGCCGaucc -5'
25912 3' -62.6 NC_005337.1 + 1034 0.66 0.619932
Target:  5'- uCACuuUGCGCgggaGGCGGgcggcgggagGCCGGCgGGGg -3'
miRNA:   3'- -GUGcgGCGCGa---CCGCC----------UGGCCGaUCC- -5'
25912 3' -62.6 NC_005337.1 + 990 0.66 0.619932
Target:  5'- gCGCGgCGCGCggagGGCGGGCguCGcCUGGa -3'
miRNA:   3'- -GUGCgGCGCGa---CCGCCUG--GCcGAUCc -5'
25912 3' -62.6 NC_005337.1 + 125384 0.66 0.616988
Target:  5'- aCGCgGCCGCGCcugUGGCGcggcccuugguccuGACCGuGCccGGGg -3'
miRNA:   3'- -GUG-CGGCGCG---ACCGC--------------CUGGC-CGa-UCC- -5'
25912 3' -62.6 NC_005337.1 + 77143 0.66 0.614045
Target:  5'- cCACGgCGUccagGCUGGCGGcgaccacgggguacuGCCGGCg--- -3'
miRNA:   3'- -GUGCgGCG----CGACCGCC---------------UGGCCGaucc -5'
25912 3' -62.6 NC_005337.1 + 83980 0.66 0.610123
Target:  5'- uCACGCCG-GUgguggucuccaUGGCGGACgaggaGGCgGGGu -3'
miRNA:   3'- -GUGCGGCgCG-----------ACCGCCUGg----CCGaUCC- -5'
25912 3' -62.6 NC_005337.1 + 75779 0.66 0.609143
Target:  5'- -cCGCCGCucguuaaGCUGcUGGAgCGGCUGGa -3'
miRNA:   3'- guGCGGCG-------CGACcGCCUgGCCGAUCc -5'
25912 3' -62.6 NC_005337.1 + 131667 0.66 0.604245
Target:  5'- gCGCGCCGCGCUGaacgacuucgacuucGCGcGCgUGGCUAa- -3'
miRNA:   3'- -GUGCGGCGCGAC---------------CGCcUG-GCCGAUcc -5'
25912 3' -62.6 NC_005337.1 + 131613 0.66 0.60033
Target:  5'- gCGCGCacucaGCGUggaGGCGG-CCGGCg--- -3'
miRNA:   3'- -GUGCGg----CGCGa--CCGCCuGGCCGaucc -5'
25912 3' -62.6 NC_005337.1 + 115460 0.66 0.60033
Target:  5'- gUACGaCGCGCUGGCGuacucgcACCGGUgcacgcacGGGg -3'
miRNA:   3'- -GUGCgGCGCGACCGCc------UGGCCGa-------UCC- -5'
25912 3' -62.6 NC_005337.1 + 123699 0.66 0.60033
Target:  5'- gACGCCGUGC-GGCGGcUgGGCa--- -3'
miRNA:   3'- gUGCGGCGCGaCCGCCuGgCCGaucc -5'
25912 3' -62.6 NC_005337.1 + 32657 0.66 0.60033
Target:  5'- aCAgGUCGCagagggggcuGCUGGCGGAgaGGCgucGGa -3'
miRNA:   3'- -GUgCGGCG----------CGACCGCCUggCCGau-CC- -5'
25912 3' -62.6 NC_005337.1 + 85348 0.66 0.60033
Target:  5'- uCACGCCGCaGUUGcCGGACgCGGUg--- -3'
miRNA:   3'- -GUGCGGCG-CGACcGCCUG-GCCGaucc -5'
25912 3' -62.6 NC_005337.1 + 133071 0.66 0.590558
Target:  5'- gUACGCgGCGCcGGUGG-CCGcCUGGa -3'
miRNA:   3'- -GUGCGgCGCGaCCGCCuGGCcGAUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.