miRNA display CGI


Results 21 - 40 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25914 3' -58.9 NC_005337.1 + 104262 0.66 0.797361
Target:  5'- aGUGUcgACAUGgUCCGCAGcaaggagUUCGCGCGg -3'
miRNA:   3'- -CGCG--UGUGCaGGGCGUCa------AGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 115338 0.66 0.797361
Target:  5'- -aGCGgAUGUCCCGCcugcuGUUCggguaCGCGCu -3'
miRNA:   3'- cgCGUgUGCAGGGCGu----CAAG-----GCGCGc -5'
25914 3' -58.9 NC_005337.1 + 40979 0.66 0.797361
Target:  5'- aGCGcCACGCaGUCCCGC---UCUGCcacgGCGg -3'
miRNA:   3'- -CGC-GUGUG-CAGGGCGucaAGGCG----CGC- -5'
25914 3' -58.9 NC_005337.1 + 128493 0.66 0.797361
Target:  5'- cGCGgGCguGCGUCgCGUAcGUggUCGCGCGg -3'
miRNA:   3'- -CGCgUG--UGCAGgGCGU-CAa-GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 77474 0.66 0.797361
Target:  5'- uGCGCggcgACGCGUCCCGgGG--CgGUGCa -3'
miRNA:   3'- -CGCG----UGUGCAGGGCgUCaaGgCGCGc -5'
25914 3' -58.9 NC_005337.1 + 5652 0.66 0.797361
Target:  5'- aCGCcCACGUUgCCGCGGUagUCgGCGUc -3'
miRNA:   3'- cGCGuGUGCAG-GGCGUCA--AGgCGCGc -5'
25914 3' -58.9 NC_005337.1 + 45309 0.66 0.797361
Target:  5'- uCGCACAcCGggaCCGCGcccuccgccUCCGCGCGg -3'
miRNA:   3'- cGCGUGU-GCag-GGCGUca-------AGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 119855 0.66 0.797361
Target:  5'- cCGCACGUGUCUccuggcggCGCGGUUCaGCGCc -3'
miRNA:   3'- cGCGUGUGCAGG--------GCGUCAAGgCGCGc -5'
25914 3' -58.9 NC_005337.1 + 81258 0.66 0.797361
Target:  5'- aGCGU-CACGagCCGCAG--CCGgGCGg -3'
miRNA:   3'- -CGCGuGUGCagGGCGUCaaGGCgCGC- -5'
25914 3' -58.9 NC_005337.1 + 5499 0.66 0.796479
Target:  5'- cGCGCGCA---CCCGUgcuaccaGGUUCgCGCGCc -3'
miRNA:   3'- -CGCGUGUgcaGGGCG-------UCAAG-GCGCGc -5'
25914 3' -58.9 NC_005337.1 + 5546 0.66 0.788478
Target:  5'- cGCGCuccagcaGCGgCUCGCGGUaCaCGCGCGc -3'
miRNA:   3'- -CGCGug-----UGCaGGGCGUCAaG-GCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 45247 0.66 0.788478
Target:  5'- cGCGCauGCGCGUUCCGUAc--UUGCGCa -3'
miRNA:   3'- -CGCG--UGUGCAGGGCGUcaaGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 110729 0.66 0.788478
Target:  5'- cGUGUACGCGgggcaggcCCCGCcGgggUCCGCGa- -3'
miRNA:   3'- -CGCGUGUGCa-------GGGCGuCa--AGGCGCgc -5'
25914 3' -58.9 NC_005337.1 + 33122 0.66 0.785787
Target:  5'- uCGCGUAgGUCCCGaagagcuuguccacCAGgUCCGCGCa -3'
miRNA:   3'- cGCGUGUgCAGGGC--------------GUCaAGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 59885 0.66 0.785787
Target:  5'- gGCGCugAUGUgCUGCAGcgggucccggaagacCCGCGUGc -3'
miRNA:   3'- -CGCGugUGCAgGGCGUCaa-------------GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 115661 0.66 0.77946
Target:  5'- -gGCA-ACGucaUCCUGCAGauacUCCGCGCGc -3'
miRNA:   3'- cgCGUgUGC---AGGGCGUCa---AGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 89775 0.66 0.77946
Target:  5'- aGCGCgaguuGCGCGUCggugaCGCGG--CCGCGCc -3'
miRNA:   3'- -CGCG-----UGUGCAGg----GCGUCaaGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 127168 0.66 0.77946
Target:  5'- gGCGCGgACGU-CCGCGagUCUGaCGCGu -3'
miRNA:   3'- -CGCGUgUGCAgGGCGUcaAGGC-GCGC- -5'
25914 3' -58.9 NC_005337.1 + 42366 0.66 0.77946
Target:  5'- gGCGaCGCACGUcgugaccggcgaCCCGgAGgcgCCGCgGCGc -3'
miRNA:   3'- -CGC-GUGUGCA------------GGGCgUCaa-GGCG-CGC- -5'
25914 3' -58.9 NC_005337.1 + 65990 0.66 0.77946
Target:  5'- gGUGCGaggccguGCGUCCCGUGGgcgaGCGCGu -3'
miRNA:   3'- -CGCGUg------UGCAGGGCGUCaaggCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.