miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25914 5' -55.3 NC_005337.1 + 127892 0.66 0.90801
Target:  5'- cGGCGCcgGCGAGCgcgUG-CGGGc-CGaGCCg -3'
miRNA:   3'- -UCGCG--UGCUUGa--ACaGCCCuaGC-CGG- -5'
25914 5' -55.3 NC_005337.1 + 32063 0.66 0.90801
Target:  5'- gGGCGUACG----UGUCGGGGUCcGUg -3'
miRNA:   3'- -UCGCGUGCuugaACAGCCCUAGcCGg -5'
25914 5' -55.3 NC_005337.1 + 122210 0.66 0.90801
Target:  5'- cGgGCGCGGACgUGUCGGcGcgCacGCCg -3'
miRNA:   3'- uCgCGUGCUUGaACAGCC-CuaGc-CGG- -5'
25914 5' -55.3 NC_005337.1 + 17278 0.66 0.90801
Target:  5'- uGGCGCACGuugaAGC-UGUCGaGGAUguGCCc -3'
miRNA:   3'- -UCGCGUGC----UUGaACAGC-CCUAgcCGG- -5'
25914 5' -55.3 NC_005337.1 + 65370 0.66 0.90801
Target:  5'- cGCaCACGcGCUUGUCGcugagcGGcUUGGCCa -3'
miRNA:   3'- uCGcGUGCuUGAACAGC------CCuAGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 99248 0.66 0.90801
Target:  5'- cGCGCucgccGCGGACggcgacgCGGGGUucggcaCGGCCg -3'
miRNA:   3'- uCGCG-----UGCUUGaaca---GCCCUA------GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 97779 0.66 0.90801
Target:  5'- cGCGC-CGAGCgccgCGGccgCGGCCa -3'
miRNA:   3'- uCGCGuGCUUGaacaGCCcuaGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 86653 0.66 0.906777
Target:  5'- uGGCGCGCaGAcGCUUGUUGuccgccucgaaGUCGGCCu -3'
miRNA:   3'- -UCGCGUG-CU-UGAACAGCcc---------UAGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 43062 0.66 0.906157
Target:  5'- uGCGCcacgaccACGAAC-UGUCGGauguccaccgCGGCCa -3'
miRNA:   3'- uCGCG-------UGCUUGaACAGCCcua-------GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 77513 0.66 0.901751
Target:  5'- gAGCucCACGGGCUUGgucgucgagccCGGGAUCuucgcguaguuGGCCg -3'
miRNA:   3'- -UCGc-GUGCUUGAACa----------GCCCUAG-----------CCGG- -5'
25914 5' -55.3 NC_005337.1 + 108696 0.66 0.901751
Target:  5'- cGGCGaCACcGACUccgUGUuccuggaggUGGGGUCGGCg -3'
miRNA:   3'- -UCGC-GUGcUUGA---ACA---------GCCCUAGCCGg -5'
25914 5' -55.3 NC_005337.1 + 36283 0.66 0.901751
Target:  5'- cGCuGCGCGAACgcggccacggUGUCGcGGAU-GGCg -3'
miRNA:   3'- uCG-CGUGCUUGa---------ACAGC-CCUAgCCGg -5'
25914 5' -55.3 NC_005337.1 + 9338 0.66 0.901751
Target:  5'- uGCGUccggAgGGACUgcUGUCGGGGUCcaggGGCa -3'
miRNA:   3'- uCGCG----UgCUUGA--ACAGCCCUAG----CCGg -5'
25914 5' -55.3 NC_005337.1 + 12696 0.66 0.901751
Target:  5'- cGGCGCGCGuACaUG-CGGuGcUCGGCg -3'
miRNA:   3'- -UCGCGUGCuUGaACaGCC-CuAGCCGg -5'
25914 5' -55.3 NC_005337.1 + 19411 0.66 0.901751
Target:  5'- aGGCGC-CGA---UGUCGGaGAcgCGGUCg -3'
miRNA:   3'- -UCGCGuGCUugaACAGCC-CUa-GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 24038 0.66 0.901751
Target:  5'- cGGCuCACGcAGCUgUGcUCGGGcgacgCGGCCg -3'
miRNA:   3'- -UCGcGUGC-UUGA-AC-AGCCCua---GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 68255 0.66 0.90047
Target:  5'- cGGCGCGUGGGCgagcGUCGaGGAcuucgacgucugCGGCCg -3'
miRNA:   3'- -UCGCGUGCUUGaa--CAGC-CCUa-----------GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 46674 0.67 0.895256
Target:  5'- cGCGCAgcagucgccCGAGCggcGcCGGGAggUCGGCg -3'
miRNA:   3'- uCGCGU---------GCUUGaa-CaGCCCU--AGCCGg -5'
25914 5' -55.3 NC_005337.1 + 64987 0.67 0.895256
Target:  5'- -cCGCGCGAACUgcccGUCGcGcgCGGCg -3'
miRNA:   3'- ucGCGUGCUUGAa---CAGCcCuaGCCGg -5'
25914 5' -55.3 NC_005337.1 + 66908 0.67 0.895256
Target:  5'- cGGCGCACGAugUacUCGGucAUgGGCUg -3'
miRNA:   3'- -UCGCGUGCUugAacAGCCc-UAgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.