miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25915 3' -60.4 NC_005337.1 + 103326 0.66 0.716788
Target:  5'- uCGGCGCCGGG-CGgcucaccCGcccGCUGCUgGUg -3'
miRNA:   3'- -GUCGCGGCCCaGCa------GC---UGACGAgCGu -5'
25915 3' -60.4 NC_005337.1 + 74646 0.66 0.716788
Target:  5'- gGGCGCCgcugcccgGGGagaccuUCGUgGACUGCgugacgCGCGa -3'
miRNA:   3'- gUCGCGG--------CCC------AGCAgCUGACGa-----GCGU- -5'
25915 3' -60.4 NC_005337.1 + 13909 0.66 0.707034
Target:  5'- cCAGCGUcaucguCGGGUCGUgGGCggg-CGCAg -3'
miRNA:   3'- -GUCGCG------GCCCAGCAgCUGacgaGCGU- -5'
25915 3' -60.4 NC_005337.1 + 27431 0.66 0.69722
Target:  5'- -cGCGcCCGGGUCGUCG-CaGUggaaGCAg -3'
miRNA:   3'- guCGC-GGCCCAGCAGCuGaCGag--CGU- -5'
25915 3' -60.4 NC_005337.1 + 122052 0.66 0.69722
Target:  5'- gAGUGCCGcGUCGUgGagacGCUGCcCGCGg -3'
miRNA:   3'- gUCGCGGCcCAGCAgC----UGACGaGCGU- -5'
25915 3' -60.4 NC_005337.1 + 57277 0.66 0.69722
Target:  5'- -cGCGCgGGGcCGgcgcgcgCGGCUGCggCGCc -3'
miRNA:   3'- guCGCGgCCCaGCa------GCUGACGa-GCGu -5'
25915 3' -60.4 NC_005337.1 + 68556 0.66 0.675457
Target:  5'- aCGGCGCCGGGcgcgccccaccgCGUgCGGCUGU--GCAc -3'
miRNA:   3'- -GUCGCGGCCCa-----------GCA-GCUGACGagCGU- -5'
25915 3' -60.4 NC_005337.1 + 109275 0.67 0.657525
Target:  5'- aAGuCGUacgagCGGGUCGUCGACaagacGUUCGCu -3'
miRNA:   3'- gUC-GCG-----GCCCAGCAGCUGa----CGAGCGu -5'
25915 3' -60.4 NC_005337.1 + 22073 0.67 0.647532
Target:  5'- aAGCGCCuGGcCGUacugCGcCUGCUCGUg -3'
miRNA:   3'- gUCGCGGcCCaGCA----GCuGACGAGCGu -5'
25915 3' -60.4 NC_005337.1 + 130787 0.67 0.647532
Target:  5'- gGGCGCCGccGGUg--CGGCUGCUgCGCu -3'
miRNA:   3'- gUCGCGGC--CCAgcaGCUGACGA-GCGu -5'
25915 3' -60.4 NC_005337.1 + 91895 0.67 0.647532
Target:  5'- gCGGCGCCuccGGGUCGccggucaCGACgUGCgUCGCc -3'
miRNA:   3'- -GUCGCGG---CCCAGCa------GCUG-ACG-AGCGu -5'
25915 3' -60.4 NC_005337.1 + 59518 0.67 0.647532
Target:  5'- cCGGUGaCCaGGUCGUCGAUgaagGCgUGCAc -3'
miRNA:   3'- -GUCGC-GGcCCAGCAGCUGa---CGaGCGU- -5'
25915 3' -60.4 NC_005337.1 + 80373 0.67 0.617515
Target:  5'- -cGCGCCGgucgcggacccGGUCGUgUGGCUGC-CGCu -3'
miRNA:   3'- guCGCGGC-----------CCAGCA-GCUGACGaGCGu -5'
25915 3' -60.4 NC_005337.1 + 125507 0.68 0.597543
Target:  5'- gAG-GUgGaGGUCGUgCGGCUGCUCGUg -3'
miRNA:   3'- gUCgCGgC-CCAGCA-GCUGACGAGCGu -5'
25915 3' -60.4 NC_005337.1 + 9764 0.68 0.597543
Target:  5'- cCGGCGCCGGGUUGgcacCGGCcucCUCGa- -3'
miRNA:   3'- -GUCGCGGCCCAGCa---GCUGac-GAGCgu -5'
25915 3' -60.4 NC_005337.1 + 38333 0.68 0.597543
Target:  5'- cCGGCGCCGGGcgaGUaCGcGCUGCgcaucaCGCAc -3'
miRNA:   3'- -GUCGCGGCCCag-CA-GC-UGACGa-----GCGU- -5'
25915 3' -60.4 NC_005337.1 + 10008 0.68 0.597543
Target:  5'- cCGGCGCCGccGUCGUCG--UGCUCGa- -3'
miRNA:   3'- -GUCGCGGCc-CAGCAGCugACGAGCgu -5'
25915 3' -60.4 NC_005337.1 + 49577 0.68 0.585604
Target:  5'- cCAGCGCCGGGUCcgugggaUCGGCgaccagugggagGCgccCGCGg -3'
miRNA:   3'- -GUCGCGGCCCAGc------AGCUGa-----------CGa--GCGU- -5'
25915 3' -60.4 NC_005337.1 + 109521 0.68 0.567785
Target:  5'- aCGGUGCCaGGUCcUCGuGCUGCagCGCGa -3'
miRNA:   3'- -GUCGCGGcCCAGcAGC-UGACGa-GCGU- -5'
25915 3' -60.4 NC_005337.1 + 44962 0.68 0.567785
Target:  5'- cCAGCGCCGcGUCGaugacCGACUGCUU-CAa -3'
miRNA:   3'- -GUCGCGGCcCAGCa----GCUGACGAGcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.