miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25915 5' -53.9 NC_005337.1 + 77769 0.66 0.951587
Target:  5'- gGCGCGgucgcgGAcguGGGCcaCGAaCUUGGCGa -3'
miRNA:   3'- aCGCGCa-----CUu--CCCGuaGCU-GAACUGC- -5'
25915 5' -53.9 NC_005337.1 + 100022 0.66 0.951587
Target:  5'- gGCGCGgaccgugcUGGAGGuGC-UCGACggGACc -3'
miRNA:   3'- aCGCGC--------ACUUCC-CGuAGCUGaaCUGc -5'
25915 5' -53.9 NC_005337.1 + 101520 0.66 0.951587
Target:  5'- cGCGCGgcUGGAGGcCGUgGACgUGACc -3'
miRNA:   3'- aCGCGC--ACUUCCcGUAgCUGaACUGc -5'
25915 5' -53.9 NC_005337.1 + 98981 0.66 0.951587
Target:  5'- cGCGCGaUGAAGuGCAUCGAggccGugGa -3'
miRNA:   3'- aCGCGC-ACUUCcCGUAGCUgaa-CugC- -5'
25915 5' -53.9 NC_005337.1 + 93274 0.66 0.9473
Target:  5'- gGCGaGgccGggGGuGCGUCGGCgccuggUGGCGg -3'
miRNA:   3'- aCGCgCa--CuuCC-CGUAGCUGa-----ACUGC- -5'
25915 5' -53.9 NC_005337.1 + 113113 0.66 0.9473
Target:  5'- cGCGCGacGAAcGGCGUCGAgCagGACGc -3'
miRNA:   3'- aCGCGCa-CUUcCCGUAGCU-GaaCUGC- -5'
25915 5' -53.9 NC_005337.1 + 102782 0.66 0.9473
Target:  5'- aGCGCGUcGAAGGGUga-GcCUguugGACGa -3'
miRNA:   3'- aCGCGCA-CUUCCCGuagCuGAa---CUGC- -5'
25915 5' -53.9 NC_005337.1 + 79603 0.66 0.946858
Target:  5'- aGCGUGcUGAAGGugcgcuccGCGUCGAaggggguCUUGAUGu -3'
miRNA:   3'- aCGCGC-ACUUCC--------CGUAGCU-------GAACUGC- -5'
25915 5' -53.9 NC_005337.1 + 45898 0.66 0.94277
Target:  5'- cUGCGCGUGGgcguGGGCGUCcccCUuugGACc -3'
miRNA:   3'- -ACGCGCACUu---CCCGUAGcu-GAa--CUGc -5'
25915 5' -53.9 NC_005337.1 + 25133 0.66 0.94277
Target:  5'- aGCGCGaUGuuGGGGUuguccggCGACUUGAa- -3'
miRNA:   3'- aCGCGC-ACu-UCCCGua-----GCUGAACUgc -5'
25915 5' -53.9 NC_005337.1 + 59104 0.66 0.937503
Target:  5'- cGCGCGcGAggcgacgAGGGCGgucCGGCUcaccGACGg -3'
miRNA:   3'- aCGCGCaCU-------UCCCGUa--GCUGAa---CUGC- -5'
25915 5' -53.9 NC_005337.1 + 68922 0.66 0.930892
Target:  5'- gUGUGCGUGugcGGCAUCGACccguacccgcgcGGCGg -3'
miRNA:   3'- -ACGCGCACuucCCGUAGCUGaa----------CUGC- -5'
25915 5' -53.9 NC_005337.1 + 122197 0.67 0.927698
Target:  5'- cGCGCG---AGGGCGUgGACgucaagGACa -3'
miRNA:   3'- aCGCGCacuUCCCGUAgCUGaa----CUGc -5'
25915 5' -53.9 NC_005337.1 + 50456 0.67 0.927698
Target:  5'- gGCGCGUGuuguccuGGcGCGccCGACgggUGGCGg -3'
miRNA:   3'- aCGCGCACuu-----CC-CGUa-GCUGa--ACUGC- -5'
25915 5' -53.9 NC_005337.1 + 85193 0.67 0.922176
Target:  5'- cUGCGCGaUGGA-GGCGUUGGuCUUGAa- -3'
miRNA:   3'- -ACGCGC-ACUUcCCGUAGCU-GAACUgc -5'
25915 5' -53.9 NC_005337.1 + 830 0.67 0.916404
Target:  5'- cGCGCGcGGGcccGGGC-UCGACgaaGGCGg -3'
miRNA:   3'- aCGCGCaCUU---CCCGuAGCUGaa-CUGC- -5'
25915 5' -53.9 NC_005337.1 + 105354 0.67 0.916404
Target:  5'- cGCGCGUGAAGGccucCGACUUcguaGCGg -3'
miRNA:   3'- aCGCGCACUUCCcguaGCUGAAc---UGC- -5'
25915 5' -53.9 NC_005337.1 + 830 0.67 0.916404
Target:  5'- cGCGCGcGGGcccGGGC-UCGACgaaGGCGg -3'
miRNA:   3'- aCGCGCaCUU---CCCGuAGCUGaa-CUGC- -5'
25915 5' -53.9 NC_005337.1 + 127483 0.67 0.910385
Target:  5'- gGCuGCGauccGgcGGGCAUCGACaccGGCGg -3'
miRNA:   3'- aCG-CGCa---CuuCCCGUAGCUGaa-CUGC- -5'
25915 5' -53.9 NC_005337.1 + 78102 0.67 0.904119
Target:  5'- cGCGCGcUGAGGuccaggacuacGGCGUCGGcCUUGcCGc -3'
miRNA:   3'- aCGCGC-ACUUC-----------CCGUAGCU-GAACuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.