miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25915 5' -53.9 NC_005337.1 + 99351 1.09 0.004259
Target:  5'- aUGCGCGUGAAGGGCAUCGACUUGACGc -3'
miRNA:   3'- -ACGCGCACUUCCCGUAGCUGAACUGC- -5'
25915 5' -53.9 NC_005337.1 + 49272 0.79 0.307615
Target:  5'- aGCGCGUGAAcGGCAUCGGCgaacgcgcccgGGCGg -3'
miRNA:   3'- aCGCGCACUUcCCGUAGCUGaa---------CUGC- -5'
25915 5' -53.9 NC_005337.1 + 118508 0.76 0.479348
Target:  5'- gUGCGgGUGAccGGCGUCGugUcGGCGg -3'
miRNA:   3'- -ACGCgCACUucCCGUAGCugAaCUGC- -5'
25915 5' -53.9 NC_005337.1 + 109185 0.75 0.53884
Target:  5'- cGCGCGggcGGAGcucGGCGUCGcgcaGCUUGACGa -3'
miRNA:   3'- aCGCGCa--CUUC---CCGUAGC----UGAACUGC- -5'
25915 5' -53.9 NC_005337.1 + 91800 0.74 0.569536
Target:  5'- cGCGCGUGAacggGGGGCGUCG--UUGaACGc -3'
miRNA:   3'- aCGCGCACU----UCCCGUAGCugAAC-UGC- -5'
25915 5' -53.9 NC_005337.1 + 108907 0.72 0.684062
Target:  5'- aGCGCGUGAgcaAGGGCAcCaGCgaGACGc -3'
miRNA:   3'- aCGCGCACU---UCCCGUaGcUGaaCUGC- -5'
25915 5' -53.9 NC_005337.1 + 99466 0.72 0.70465
Target:  5'- cGCGCGUGcgcGAGGGCGUCuuCgUGGCc -3'
miRNA:   3'- aCGCGCAC---UUCCCGUAGcuGaACUGc -5'
25915 5' -53.9 NC_005337.1 + 77438 0.7 0.77418
Target:  5'- -cCGCGUGGAGGGCAuguggagguucUCGuggUGGCGu -3'
miRNA:   3'- acGCGCACUUCCCGU-----------AGCugaACUGC- -5'
25915 5' -53.9 NC_005337.1 + 81015 0.7 0.783661
Target:  5'- gGCGCGcGAAguccGGGCGUgGAgaUGGCGg -3'
miRNA:   3'- aCGCGCaCUU----CCCGUAgCUgaACUGC- -5'
25915 5' -53.9 NC_005337.1 + 996 0.7 0.802189
Target:  5'- cGCGCGgagGgcGGGCGUCGcCUggaGGCc -3'
miRNA:   3'- aCGCGCa--CuuCCCGUAGCuGAa--CUGc -5'
25915 5' -53.9 NC_005337.1 + 996 0.7 0.802189
Target:  5'- cGCGCGgagGgcGGGCGUCGcCUggaGGCc -3'
miRNA:   3'- aCGCGCa--CuuCCCGUAGCuGAa--CUGc -5'
25915 5' -53.9 NC_005337.1 + 60205 0.7 0.811216
Target:  5'- gGCGCG-GggGGGgA-CGGCUUgGGCGc -3'
miRNA:   3'- aCGCGCaCuuCCCgUaGCUGAA-CUGC- -5'
25915 5' -53.9 NC_005337.1 + 37708 0.69 0.832173
Target:  5'- cGCGCGUGAGGucguccaccugcagcGGCAucugcgagaagUCGACggcGGCGg -3'
miRNA:   3'- aCGCGCACUUC---------------CCGU-----------AGCUGaa-CUGC- -5'
25915 5' -53.9 NC_005337.1 + 36521 0.69 0.837246
Target:  5'- cGCGCGUGAucucGGGgGUCuuccuguuCUUGGCGu -3'
miRNA:   3'- aCGCGCACUu---CCCgUAGcu------GAACUGC- -5'
25915 5' -53.9 NC_005337.1 + 20669 0.69 0.845545
Target:  5'- gGCGCGgaccaGAGGGGCgggcacccGUCGACgcaUGAUa -3'
miRNA:   3'- aCGCGCa----CUUCCCG--------UAGCUGa--ACUGc -5'
25915 5' -53.9 NC_005337.1 + 48330 0.69 0.845545
Target:  5'- aUGUGCGUGGAcuGCuUCGACUUcgaGACGg -3'
miRNA:   3'- -ACGCGCACUUccCGuAGCUGAA---CUGC- -5'
25915 5' -53.9 NC_005337.1 + 88955 0.68 0.866157
Target:  5'- cGCGCGgaggcGGAGGGCGcggucccggugugCGACcUGGCGc -3'
miRNA:   3'- aCGCGCa----CUUCCCGUa------------GCUGaACUGC- -5'
25915 5' -53.9 NC_005337.1 + 68256 0.68 0.869199
Target:  5'- gGCGCGUGGGcGaGCGUCGAggaCUUcGACGu -3'
miRNA:   3'- aCGCGCACUUcC-CGUAGCU---GAA-CUGC- -5'
25915 5' -53.9 NC_005337.1 + 42978 0.68 0.897608
Target:  5'- gGCGCGgcGAcGGGCcagacGUUGAaCUUGGCGg -3'
miRNA:   3'- aCGCGCa-CUuCCCG-----UAGCU-GAACUGC- -5'
25915 5' -53.9 NC_005337.1 + 78102 0.67 0.904119
Target:  5'- cGCGCGcUGAGGuccaggacuacGGCGUCGGcCUUGcCGc -3'
miRNA:   3'- aCGCGC-ACUUC-----------CCGUAGCU-GAACuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.