miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25916 5' -55.5 NC_005337.1 + 80387 0.66 0.915103
Target:  5'- aGCGGgGCcgccCCGACGcGCUGCu--UGCAg -3'
miRNA:   3'- -CGCCgCGa---GGCUGC-UGAUGuacACGU- -5'
25916 5' -55.5 NC_005337.1 + 98485 0.66 0.915103
Target:  5'- aGgGGCGCgCCGGCGGCguccguCAUGacacGCGc -3'
miRNA:   3'- -CgCCGCGaGGCUGCUGau----GUACa---CGU- -5'
25916 5' -55.5 NC_005337.1 + 80611 0.66 0.915103
Target:  5'- uGCGGC-CgCCGACGcGCUGCAUcgcgGCGa -3'
miRNA:   3'- -CGCCGcGaGGCUGC-UGAUGUAca--CGU- -5'
25916 5' -55.5 NC_005337.1 + 40522 0.66 0.915103
Target:  5'- gGUGGCGCUaCCGGCGAggaggcUUGCGccgGCGg -3'
miRNA:   3'- -CGCCGCGA-GGCUGCU------GAUGUacaCGU- -5'
25916 5' -55.5 NC_005337.1 + 64036 0.66 0.915103
Target:  5'- cGUGGCGUagUCGAUGACgagcgGCGUGUuCAg -3'
miRNA:   3'- -CGCCGCGa-GGCUGCUGa----UGUACAcGU- -5'
25916 5' -55.5 NC_005337.1 + 46691 0.66 0.915103
Target:  5'- aGCGGCGCcgggaggUCGGCGACUucgACAUccUGCu -3'
miRNA:   3'- -CGCCGCGa------GGCUGCUGA---UGUAc-ACGu -5'
25916 5' -55.5 NC_005337.1 + 52997 0.66 0.915103
Target:  5'- gGCGcGUGCUCCuguaGCGGCgGCAUGaaccUGCGg -3'
miRNA:   3'- -CGC-CGCGAGGc---UGCUGaUGUAC----ACGU- -5'
25916 5' -55.5 NC_005337.1 + 92701 0.66 0.909104
Target:  5'- gGgGGcCGuCUUCGACGACUccaaGCGcGUGCGc -3'
miRNA:   3'- -CgCC-GC-GAGGCUGCUGA----UGUaCACGU- -5'
25916 5' -55.5 NC_005337.1 + 32841 0.66 0.909104
Target:  5'- gGCgGGCGUgacaUCCGugGugUucuggaGCAUgGUGCAc -3'
miRNA:   3'- -CG-CCGCG----AGGCugCugA------UGUA-CACGU- -5'
25916 5' -55.5 NC_005337.1 + 54267 0.66 0.909104
Target:  5'- uGCGGCGCUUagcgccgcgCGGCGACgaaaaaACAUGcuuUGUg -3'
miRNA:   3'- -CGCCGCGAG---------GCUGCUGa-----UGUAC---ACGu -5'
25916 5' -55.5 NC_005337.1 + 123133 0.66 0.909104
Target:  5'- uGCGGCGC-CCGucGCGG-UGCGUGUuCAc -3'
miRNA:   3'- -CGCCGCGaGGC--UGCUgAUGUACAcGU- -5'
25916 5' -55.5 NC_005337.1 + 19248 0.66 0.907257
Target:  5'- gGCaGGgGCagaggaugcucuugUCCGcGCGGCUGCGUGUGgAg -3'
miRNA:   3'- -CG-CCgCG--------------AGGC-UGCUGAUGUACACgU- -5'
25916 5' -55.5 NC_005337.1 + 74536 0.66 0.902864
Target:  5'- cGCGgagacGCGCUCCGccgcGCGGC-GCGUGaUGCu -3'
miRNA:   3'- -CGC-----CGCGAGGC----UGCUGaUGUAC-ACGu -5'
25916 5' -55.5 NC_005337.1 + 71133 0.66 0.902864
Target:  5'- gGCGGCgGCaCCGGCaACUGCAccUGUugGCAg -3'
miRNA:   3'- -CGCCG-CGaGGCUGcUGAUGU--ACA--CGU- -5'
25916 5' -55.5 NC_005337.1 + 41748 0.66 0.902864
Target:  5'- uUGGCGCUgcugcUCGGCGGCUAUgAUGUaGCc -3'
miRNA:   3'- cGCCGCGA-----GGCUGCUGAUG-UACA-CGu -5'
25916 5' -55.5 NC_005337.1 + 131895 0.66 0.902864
Target:  5'- gGCgGGCGCgcaCGugGACgcggucgACcgGUGCu -3'
miRNA:   3'- -CG-CCGCGag-GCugCUGa------UGuaCACGu -5'
25916 5' -55.5 NC_005337.1 + 75859 0.66 0.896387
Target:  5'- aGCGGCGCcgCCGcgAUGGCgUACAUcaUGCAc -3'
miRNA:   3'- -CGCCGCGa-GGC--UGCUG-AUGUAc-ACGU- -5'
25916 5' -55.5 NC_005337.1 + 60886 0.66 0.896387
Target:  5'- cCGGCGUUUCGuCGG--GCGUGUGUg -3'
miRNA:   3'- cGCCGCGAGGCuGCUgaUGUACACGu -5'
25916 5' -55.5 NC_005337.1 + 52477 0.66 0.896387
Target:  5'- cGCGGCGC-CCGcgagagcCGGCU-CAUGcGCGc -3'
miRNA:   3'- -CGCCGCGaGGCu------GCUGAuGUACaCGU- -5'
25916 5' -55.5 NC_005337.1 + 123845 0.66 0.889676
Target:  5'- cCGGCGUUCgCGGCG--UGCAUGgacgGCGg -3'
miRNA:   3'- cGCCGCGAG-GCUGCugAUGUACa---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.