miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25917 5' -59.1 NC_005337.1 + 114443 0.66 0.74218
Target:  5'- cGUC-CGGCuCAUCGAGGA---GCGGUu -3'
miRNA:   3'- -UAGcGCCG-GUAGCUCCUguaCGCCGu -5'
25917 5' -59.1 NC_005337.1 + 74939 0.66 0.74218
Target:  5'- -gCGCGGCCG-CGcGGA--UGCGGUg -3'
miRNA:   3'- uaGCGCCGGUaGCuCCUguACGCCGu -5'
25917 5' -59.1 NC_005337.1 + 114548 0.66 0.74218
Target:  5'- gAUgGaGGCCAUCGuGGAgGcGCGGCc -3'
miRNA:   3'- -UAgCgCCGGUAGCuCCUgUaCGCCGu -5'
25917 5' -59.1 NC_005337.1 + 73497 0.66 0.74218
Target:  5'- cGUCGCGGUCGUgaaggCGGugcuGGGCAcccgcgagGCGGCAc -3'
miRNA:   3'- -UAGCGCCGGUA-----GCU----CCUGUa-------CGCCGU- -5'
25917 5' -59.1 NC_005337.1 + 65255 0.66 0.74218
Target:  5'- -aCGCcaGUCAUCcGGGACAcgGCGGCGg -3'
miRNA:   3'- uaGCGc-CGGUAGcUCCUGUa-CGCCGU- -5'
25917 5' -59.1 NC_005337.1 + 130160 0.66 0.732426
Target:  5'- cUCGCGcGCUuUCgGAGGcCGUGCGcGCGg -3'
miRNA:   3'- uAGCGC-CGGuAG-CUCCuGUACGC-CGU- -5'
25917 5' -59.1 NC_005337.1 + 63527 0.66 0.732426
Target:  5'- -gUGCaGGCC-UCG-GG-CGUGCGGCGc -3'
miRNA:   3'- uaGCG-CCGGuAGCuCCuGUACGCCGU- -5'
25917 5' -59.1 NC_005337.1 + 62364 0.66 0.732426
Target:  5'- -aCGCugaccccGUCGUCGAGGAC--GCGGCGg -3'
miRNA:   3'- uaGCGc------CGGUAGCUCCUGuaCGCCGU- -5'
25917 5' -59.1 NC_005337.1 + 107493 0.66 0.732426
Target:  5'- -gCaCGGCCgucGUCGAGGACGUG-GGUc -3'
miRNA:   3'- uaGcGCCGG---UAGCUCCUGUACgCCGu -5'
25917 5' -59.1 NC_005337.1 + 16019 0.66 0.722584
Target:  5'- -gCGCGGCCGgc-AGGuACAcgcgcUGCGGCGc -3'
miRNA:   3'- uaGCGCCGGUagcUCC-UGU-----ACGCCGU- -5'
25917 5' -59.1 NC_005337.1 + 40542 0.66 0.722584
Target:  5'- -cCGCGGCg--CGcGGugGUGCGGUu -3'
miRNA:   3'- uaGCGCCGguaGCuCCugUACGCCGu -5'
25917 5' -59.1 NC_005337.1 + 68312 0.66 0.722584
Target:  5'- -gCGCGuGCC--CGAGGAgG-GCGGCAc -3'
miRNA:   3'- uaGCGC-CGGuaGCUCCUgUaCGCCGU- -5'
25917 5' -59.1 NC_005337.1 + 57862 0.66 0.722584
Target:  5'- --gGCGGCCA--GGGGACAccugUGCGGa- -3'
miRNA:   3'- uagCGCCGGUagCUCCUGU----ACGCCgu -5'
25917 5' -59.1 NC_005337.1 + 64035 0.66 0.722584
Target:  5'- -gCGUGGCguaGUCGAuGACGaGCGGCGu -3'
miRNA:   3'- uaGCGCCGg--UAGCUcCUGUaCGCCGU- -5'
25917 5' -59.1 NC_005337.1 + 9896 0.66 0.722584
Target:  5'- -aCGCGGCCAUgucgcaggaGGGGAagAUGCGGg- -3'
miRNA:   3'- uaGCGCCGGUAg--------CUCCUg-UACGCCgu -5'
25917 5' -59.1 NC_005337.1 + 103406 0.66 0.722584
Target:  5'- gGUCGCGGCCcagcagCuGGGGCuUGUGGUc -3'
miRNA:   3'- -UAGCGCCGGua----GcUCCUGuACGCCGu -5'
25917 5' -59.1 NC_005337.1 + 24845 0.66 0.722584
Target:  5'- --aGCGGCgCGugcUCGAGGACGUGguCGcGCAc -3'
miRNA:   3'- uagCGCCG-GU---AGCUCCUGUAC--GC-CGU- -5'
25917 5' -59.1 NC_005337.1 + 82188 0.66 0.721596
Target:  5'- -aCGCGGCCGcCGGGcgcgcacGGCcgGCGGUc -3'
miRNA:   3'- uaGCGCCGGUaGCUC-------CUGuaCGCCGu -5'
25917 5' -59.1 NC_005337.1 + 2429 0.66 0.712666
Target:  5'- gGUCGgGGCCGUCGuagugcAGGuACGUGU-GCAg -3'
miRNA:   3'- -UAGCgCCGGUAGC------UCC-UGUACGcCGU- -5'
25917 5' -59.1 NC_005337.1 + 12717 0.66 0.712666
Target:  5'- -gCGCGcGCCGcgcUCGAGGAgGUGcCGGa- -3'
miRNA:   3'- uaGCGC-CGGU---AGCUCCUgUAC-GCCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.