miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25918 3' -56.5 NC_005337.1 + 94204 0.66 0.886238
Target:  5'- aCCuuGCACuCCGcGCGGuaccGGUCCCCg -3'
miRNA:   3'- cGGcuCGUGcGGUuCGUCu---UCAGGGG- -5'
25918 3' -56.5 NC_005337.1 + 2699 0.66 0.886238
Target:  5'- -aUGAGCACGUuguCGGGCuuGAGGUCCa- -3'
miRNA:   3'- cgGCUCGUGCG---GUUCGu-CUUCAGGgg -5'
25918 3' -56.5 NC_005337.1 + 131191 0.66 0.886238
Target:  5'- cGCUG-GCcguCGCCGAGguGcgcgGAGUCCgCg -3'
miRNA:   3'- -CGGCuCGu--GCGGUUCguC----UUCAGGgG- -5'
25918 3' -56.5 NC_005337.1 + 66064 0.66 0.886238
Target:  5'- cGCCGucaGGCGgGCCc-GCAGcGGcgCCCCc -3'
miRNA:   3'- -CGGC---UCGUgCGGuuCGUCuUCa-GGGG- -5'
25918 3' -56.5 NC_005337.1 + 21929 0.66 0.886238
Target:  5'- gGCCGcGCGCuccGCCGAGCucgcGGAGUCaUCg -3'
miRNA:   3'- -CGGCuCGUG---CGGUUCGu---CUUCAGgGG- -5'
25918 3' -56.5 NC_005337.1 + 8135 0.66 0.886238
Target:  5'- aGUCGGGgACGCCGGGCAu-GG-CCgCg -3'
miRNA:   3'- -CGGCUCgUGCGGUUCGUcuUCaGGgG- -5'
25918 3' -56.5 NC_005337.1 + 81909 0.66 0.886238
Target:  5'- cCCGcAGC-CGUC-AGCGGccccGUCCCCg -3'
miRNA:   3'- cGGC-UCGuGCGGuUCGUCuu--CAGGGG- -5'
25918 3' -56.5 NC_005337.1 + 133079 0.66 0.886238
Target:  5'- cGCCGguGGC-CGCCuggauGCAGGAGaUCCg- -3'
miRNA:   3'- -CGGC--UCGuGCGGuu---CGUCUUC-AGGgg -5'
25918 3' -56.5 NC_005337.1 + 14822 0.66 0.886238
Target:  5'- -gCGAGgACGCCGuGGUGGgcGUCCUUu -3'
miRNA:   3'- cgGCUCgUGCGGU-UCGUCuuCAGGGG- -5'
25918 3' -56.5 NC_005337.1 + 128403 0.66 0.886238
Target:  5'- cGCCu-GUcccccaACGCCAcGCuccccaccaGGggGUCCCCg -3'
miRNA:   3'- -CGGcuCG------UGCGGUuCG---------UCuuCAGGGG- -5'
25918 3' -56.5 NC_005337.1 + 1329 0.66 0.886238
Target:  5'- gGUCcAGCGCGCU--GCAGAgcgGGUCgCCg -3'
miRNA:   3'- -CGGcUCGUGCGGuuCGUCU---UCAGgGG- -5'
25918 3' -56.5 NC_005337.1 + 131979 0.66 0.886238
Target:  5'- cGCgGAGCuguuCGCCAAGCuccuGUUcggCCCg -3'
miRNA:   3'- -CGgCUCGu---GCGGUUCGucuuCAG---GGG- -5'
25918 3' -56.5 NC_005337.1 + 31468 0.66 0.886238
Target:  5'- cGCUGAGCAgCGCCGcgaaGGCGu-GGUUgaaCCCg -3'
miRNA:   3'- -CGGCUCGU-GCGGU----UCGUcuUCAG---GGG- -5'
25918 3' -56.5 NC_005337.1 + 61288 0.66 0.886238
Target:  5'- cGCC--GCGCGCCAucaugaacgAGaccaGGAAGUCCgCg -3'
miRNA:   3'- -CGGcuCGUGCGGU---------UCg---UCUUCAGGgG- -5'
25918 3' -56.5 NC_005337.1 + 2389 0.66 0.886238
Target:  5'- cGUCGAcGaCACGCgCAGGCGGAagcGGUCgCa -3'
miRNA:   3'- -CGGCU-C-GUGCG-GUUCGUCU---UCAGgGg -5'
25918 3' -56.5 NC_005337.1 + 2450 0.66 0.879227
Target:  5'- uCCGAGaGCaCCGAGUGGAacgcggGGUCCUCg -3'
miRNA:   3'- cGGCUCgUGcGGUUCGUCU------UCAGGGG- -5'
25918 3' -56.5 NC_005337.1 + 88764 0.66 0.879227
Target:  5'- cGCCGAGgAC-CCGgaGGCGcAGGUCCgCg -3'
miRNA:   3'- -CGGCUCgUGcGGU--UCGUcUUCAGGgG- -5'
25918 3' -56.5 NC_005337.1 + 1256 0.66 0.879227
Target:  5'- aGCCGGGCGaucaGCC--GCAGGAuggCCCg -3'
miRNA:   3'- -CGGCUCGUg---CGGuuCGUCUUca-GGGg -5'
25918 3' -56.5 NC_005337.1 + 132102 0.66 0.879227
Target:  5'- cGCCGuGCGCGUCGGcgccgugcGCGGcAGG-CUCCg -3'
miRNA:   3'- -CGGCuCGUGCGGUU--------CGUC-UUCaGGGG- -5'
25918 3' -56.5 NC_005337.1 + 115579 0.66 0.879227
Target:  5'- cGCCGGG-GC-CCGAGCuGcuGUCUCCg -3'
miRNA:   3'- -CGGCUCgUGcGGUUCGuCuuCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.