miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 3' -59.6 NC_005337.1 + 88950 0.66 0.733907
Target:  5'- cGGaccGCGCGGAGgcGGAGgGC--GCGGu -3'
miRNA:   3'- aCC---UGCGCCUCuaCCUCgCGgaCGUC- -5'
25920 3' -59.6 NC_005337.1 + 2709 0.66 0.733907
Target:  5'- gGGACGCGGAGGagcacGAGCgcgacgacguccGCCgguaGCGGg -3'
miRNA:   3'- aCCUGCGCCUCUac---CUCG------------CGGa---CGUC- -5'
25920 3' -59.6 NC_005337.1 + 56451 0.66 0.733907
Target:  5'- aGGacaGCGCGGuGAUGGuggccAGCGaCCcGCGGc -3'
miRNA:   3'- aCC---UGCGCCuCUACC-----UCGC-GGaCGUC- -5'
25920 3' -59.6 NC_005337.1 + 24209 0.66 0.733907
Target:  5'- aGGcGCGCGucGAGGUGGAGCuGCCcccgGCc- -3'
miRNA:   3'- aCC-UGCGC--CUCUACCUCG-CGGa---CGuc -5'
25920 3' -59.6 NC_005337.1 + 91694 0.66 0.733907
Target:  5'- gGGAa--GGAGAUGGGGgacuucaCCUGCAGg -3'
miRNA:   3'- aCCUgcgCCUCUACCUCgc-----GGACGUC- -5'
25920 3' -59.6 NC_005337.1 + 82671 0.66 0.732936
Target:  5'- gGGACGCacgcgguGGuuguGGUGGAGCuG-CUGCAGc -3'
miRNA:   3'- aCCUGCG-------CCu---CUACCUCG-CgGACGUC- -5'
25920 3' -59.6 NC_005337.1 + 5887 0.66 0.724161
Target:  5'- gGGACagGCGGAccacgcGGAGCGCgUcGCAGg -3'
miRNA:   3'- aCCUG--CGCCUcua---CCUCGCGgA-CGUC- -5'
25920 3' -59.6 NC_005337.1 + 79633 0.66 0.724161
Target:  5'- cGGAUGCaGAGGUGGuugAGCaGCC-GCAu -3'
miRNA:   3'- aCCUGCGcCUCUACC---UCG-CGGaCGUc -5'
25920 3' -59.6 NC_005337.1 + 120678 0.66 0.724161
Target:  5'- cGGcugGCGGAGAUGGcGCuCCUGgGGu -3'
miRNA:   3'- aCCug-CGCCUCUACCuCGcGGACgUC- -5'
25920 3' -59.6 NC_005337.1 + 2210 0.66 0.724161
Target:  5'- cGGGCGCGGcccgGGccGcGAGCGCgC-GCAGg -3'
miRNA:   3'- aCCUGCGCC----UCuaC-CUCGCG-GaCGUC- -5'
25920 3' -59.6 NC_005337.1 + 68101 0.66 0.714337
Target:  5'- cGGACGCGGcGGUGGucguacucGGgGUC-GCGGg -3'
miRNA:   3'- aCCUGCGCCuCUACC--------UCgCGGaCGUC- -5'
25920 3' -59.6 NC_005337.1 + 66077 0.66 0.714337
Target:  5'- cGGACGCGGccgcggcGgcGGAgGCGCUgUGCGGc -3'
miRNA:   3'- aCCUGCGCCu------CuaCCU-CGCGG-ACGUC- -5'
25920 3' -59.6 NC_005337.1 + 46897 0.66 0.704444
Target:  5'- aUGGACGU-GAGAUGGAccGCGUCaaggGCGa -3'
miRNA:   3'- -ACCUGCGcCUCUACCU--CGCGGa---CGUc -5'
25920 3' -59.6 NC_005337.1 + 38998 0.66 0.704444
Target:  5'- cGGGCGCuGGGGAaauaccUGGGcccgcGCGUCUGCc- -3'
miRNA:   3'- aCCUGCG-CCUCU------ACCU-----CGCGGACGuc -5'
25920 3' -59.6 NC_005337.1 + 57273 0.66 0.694492
Target:  5'- gGGccGCGCGGGGccGGcGCGCgcggCUGCGGc -3'
miRNA:   3'- aCC--UGCGCCUCuaCCuCGCG----GACGUC- -5'
25920 3' -59.6 NC_005337.1 + 96102 0.66 0.694492
Target:  5'- cGGGCGCGGcGGA-GGAcauGCGgCCgcGCAGg -3'
miRNA:   3'- aCCUGCGCC-UCUaCCU---CGC-GGa-CGUC- -5'
25920 3' -59.6 NC_005337.1 + 57143 0.66 0.688495
Target:  5'- cUGGACGCc---GUGGAGCGCagcacccggcgcgugCUGCGGa -3'
miRNA:   3'- -ACCUGCGccucUACCUCGCG---------------GACGUC- -5'
25920 3' -59.6 NC_005337.1 + 121802 0.66 0.684488
Target:  5'- cGGACGCGGAGGcgcUGGAcgaguucgguauGaCGCCgGCc- -3'
miRNA:   3'- aCCUGCGCCUCU---ACCU------------C-GCGGaCGuc -5'
25920 3' -59.6 NC_005337.1 + 48430 0.66 0.684488
Target:  5'- cGGACGCGGAcGUGcuGGCGCugaugaagcaCUGCAa -3'
miRNA:   3'- aCCUGCGCCUcUACc-UCGCG----------GACGUc -5'
25920 3' -59.6 NC_005337.1 + 15910 0.67 0.674442
Target:  5'- aGGGCGcCGGAGGcaGAGCGaCCgaagacgGCGGg -3'
miRNA:   3'- aCCUGC-GCCUCUacCUCGC-GGa------CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.