miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 91086 0.66 0.958952
Target:  5'- --gCGCGGUGACCgugCUCGGgauggGCGUguaCCg -3'
miRNA:   3'- gggGCGCUACUGGaa-GAGCC-----UGUA---GG- -5'
25920 5' -54.4 NC_005337.1 + 24917 0.66 0.958952
Target:  5'- cCUCCGUGuacUGcACCgcCUCGGGCGUgCu -3'
miRNA:   3'- -GGGGCGCu--AC-UGGaaGAGCCUGUAgG- -5'
25920 5' -54.4 NC_005337.1 + 10120 0.66 0.958952
Target:  5'- uCUCCGCGucgcucucGCCgUCcUGGGCGUCCa -3'
miRNA:   3'- -GGGGCGCuac-----UGGaAGaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 98690 0.66 0.955197
Target:  5'- cUCCgGCGggGAuCCgcCUCGcuaGGCAUCCg -3'
miRNA:   3'- -GGGgCGCuaCU-GGaaGAGC---CUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 57123 0.66 0.955197
Target:  5'- aCCCCGUGGUcGCCgccagCcUGGACG-CCg -3'
miRNA:   3'- -GGGGCGCUAcUGGaa---GaGCCUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 125438 0.66 0.955197
Target:  5'- gCCCCGUGcucgugGACUcugugUUCgagCGGAuCAUCCc -3'
miRNA:   3'- -GGGGCGCua----CUGG-----AAGa--GCCU-GUAGG- -5'
25920 5' -54.4 NC_005337.1 + 61775 0.66 0.955197
Target:  5'- gUCCGUGGUacACCacCUCGGGCAugUCCg -3'
miRNA:   3'- gGGGCGCUAc-UGGaaGAGCCUGU--AGG- -5'
25920 5' -54.4 NC_005337.1 + 36151 0.66 0.955197
Target:  5'- gCCgCCGCGGUG-CCUggUCaCGGugGaCCg -3'
miRNA:   3'- -GG-GGCGCUACuGGA--AGaGCCugUaGG- -5'
25920 5' -54.4 NC_005337.1 + 91405 0.66 0.955197
Target:  5'- gCCCCGCuccagcACCUUCgucacgCaGGCGUCCg -3'
miRNA:   3'- -GGGGCGcuac--UGGAAGa-----GcCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 86803 0.66 0.951215
Target:  5'- gUCCCGCGAcGGCag-CgacaCGGACcgCCc -3'
miRNA:   3'- -GGGGCGCUaCUGgaaGa---GCCUGuaGG- -5'
25920 5' -54.4 NC_005337.1 + 67761 0.66 0.951215
Target:  5'- aCUCGCuGAUGAaCUUCaCGGGCA-CCa -3'
miRNA:   3'- gGGGCG-CUACUgGAAGaGCCUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 1280 0.66 0.951215
Target:  5'- gCCCGCGGaGGCgggUCggCGGGCAgguugUCCa -3'
miRNA:   3'- gGGGCGCUaCUGga-AGa-GCCUGU-----AGG- -5'
25920 5' -54.4 NC_005337.1 + 60376 0.66 0.950804
Target:  5'- aCCCCGaucacguacgcguUGAUGACC---UCGGGCGauggaUCCa -3'
miRNA:   3'- -GGGGC-------------GCUACUGGaagAGCCUGU-----AGG- -5'
25920 5' -54.4 NC_005337.1 + 97619 0.66 0.947003
Target:  5'- -gCCGCG---GCCUUCgcggacgGGACGUCCa -3'
miRNA:   3'- ggGGCGCuacUGGAAGag-----CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 71881 0.66 0.947003
Target:  5'- gCuuGCGAccgugGACUUUCUCGuccgccGCGUCCu -3'
miRNA:   3'- gGggCGCUa----CUGGAAGAGCc-----UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 29670 0.66 0.947003
Target:  5'- cUCCCGCGGUGgcGCCguaugCUCGccgccGACGaCCg -3'
miRNA:   3'- -GGGGCGCUAC--UGGaa---GAGC-----CUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 104773 0.66 0.947003
Target:  5'- aUCUCGCacggcgcGGCCUcaccgUCUCGGAgAUCCu -3'
miRNA:   3'- -GGGGCGcua----CUGGA-----AGAGCCUgUAGG- -5'
25920 5' -54.4 NC_005337.1 + 131444 0.66 0.947003
Target:  5'- uCUCCGCGGaGGCCgcgCUCGGccuggGCuucUCCu -3'
miRNA:   3'- -GGGGCGCUaCUGGaa-GAGCC-----UGu--AGG- -5'
25920 5' -54.4 NC_005337.1 + 95764 0.66 0.944365
Target:  5'- uCCCCGCGAUcgcggcgacgucgucGGCCagCUCGGcgacgcGCggCCc -3'
miRNA:   3'- -GGGGCGCUA---------------CUGGaaGAGCC------UGuaGG- -5'
25920 5' -54.4 NC_005337.1 + 3108 0.66 0.942559
Target:  5'- aCUCCGCGAccgcGACCgcggC-CGGccucGCGUCCa -3'
miRNA:   3'- -GGGGCGCUa---CUGGaa--GaGCC----UGUAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.