miRNA display CGI


Results 81 - 92 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 95764 0.66 0.944365
Target:  5'- uCCCCGCGAUcgcggcgacgucgucGGCCagCUCGGcgacgcGCggCCc -3'
miRNA:   3'- -GGGGCGCUA---------------CUGGaaGAGCC------UGuaGG- -5'
25920 5' -54.4 NC_005337.1 + 38858 0.66 0.942559
Target:  5'- gCCCCGCG-UGACgcUCgugCGGGCGcacaCCg -3'
miRNA:   3'- -GGGGCGCuACUGgaAGa--GCCUGUa---GG- -5'
25920 5' -54.4 NC_005337.1 + 29670 0.66 0.947003
Target:  5'- cUCCCGCGGUGgcGCCguaugCUCGccgccGACGaCCg -3'
miRNA:   3'- -GGGGCGCUAC--UGGaa---GAGC-----CUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 83348 0.66 0.942559
Target:  5'- gCCCCGgGAggccGACUggCUgCGGACcggCCg -3'
miRNA:   3'- -GGGGCgCUa---CUGGaaGA-GCCUGua-GG- -5'
25920 5' -54.4 NC_005337.1 + 3108 0.66 0.942559
Target:  5'- aCUCCGCGAccgcGACCgcggC-CGGccucGCGUCCa -3'
miRNA:   3'- -GGGGCGCUa---CUGGaa--GaGCC----UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 97619 0.66 0.947003
Target:  5'- -gCCGCG---GCCUUCgcggacgGGACGUCCa -3'
miRNA:   3'- ggGGCGCuacUGGAAGag-----CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 104773 0.66 0.947003
Target:  5'- aUCUCGCacggcgcGGCCUcaccgUCUCGGAgAUCCu -3'
miRNA:   3'- -GGGGCGcua----CUGGA-----AGAGCCUgUAGG- -5'
25920 5' -54.4 NC_005337.1 + 131444 0.66 0.947003
Target:  5'- uCUCCGCGGaGGCCgcgCUCGGccuggGCuucUCCu -3'
miRNA:   3'- -GGGGCGCUaCUGGaa-GAGCC-----UGu--AGG- -5'
25920 5' -54.4 NC_005337.1 + 60376 0.66 0.950804
Target:  5'- aCCCCGaucacguacgcguUGAUGACC---UCGGGCGauggaUCCa -3'
miRNA:   3'- -GGGGC-------------GCUACUGGaagAGCCUGU-----AGG- -5'
25920 5' -54.4 NC_005337.1 + 1280 0.66 0.951215
Target:  5'- gCCCGCGGaGGCgggUCggCGGGCAgguugUCCa -3'
miRNA:   3'- gGGGCGCUaCUGga-AGa-GCCUGU-----AGG- -5'
25920 5' -54.4 NC_005337.1 + 36151 0.66 0.955197
Target:  5'- gCCgCCGCGGUG-CCUggUCaCGGugGaCCg -3'
miRNA:   3'- -GG-GGCGCUACuGGA--AGaGCCugUaGG- -5'
25920 5' -54.4 NC_005337.1 + 91086 0.66 0.958952
Target:  5'- --gCGCGGUGACCgugCUCGGgauggGCGUguaCCg -3'
miRNA:   3'- gggGCGCUACUGGaa-GAGCC-----UGUA---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.