miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 103416 1.14 0.002016
Target:  5'- uCCCCGCGAUGACCUUCUCGGACAUCCa -3'
miRNA:   3'- -GGGGCGCUACUGGAAGAGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 123683 0.78 0.407945
Target:  5'- cCCCCGCGGcggGACCgggcUCgucgCGGAgAUCCg -3'
miRNA:   3'- -GGGGCGCUa--CUGGa---AGa---GCCUgUAGG- -5'
25920 5' -54.4 NC_005337.1 + 36716 0.77 0.43433
Target:  5'- cCUCCGCGAgGAUCUUCUCGGugAa-- -3'
miRNA:   3'- -GGGGCGCUaCUGGAAGAGCCugUagg -5'
25920 5' -54.4 NC_005337.1 + 69303 0.77 0.461677
Target:  5'- uUCgCGCGGgagaaGGCCUUCUCGGugGUCa -3'
miRNA:   3'- -GGgGCGCUa----CUGGAAGAGCCugUAGg -5'
25920 5' -54.4 NC_005337.1 + 86752 0.76 0.470993
Target:  5'- gUCCCGCuccggcacGAUGGCCaUCUCcGGCGUCCg -3'
miRNA:   3'- -GGGGCG--------CUACUGGaAGAGcCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 103203 0.75 0.568641
Target:  5'- aCCCCGCGAucgUGgacGCCUUCgugcUGGACAUgCg -3'
miRNA:   3'- -GGGGCGCU---AC---UGGAAGa---GCCUGUAgG- -5'
25920 5' -54.4 NC_005337.1 + 11997 0.74 0.59906
Target:  5'- cCUCCGCGucccgGuCCUUgCUCuGGACGUCCa -3'
miRNA:   3'- -GGGGCGCua---CuGGAA-GAG-CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 19331 0.74 0.616406
Target:  5'- gUCUGCGAUGGCCagcagcuccgcguggCUCaGGGCGUCCa -3'
miRNA:   3'- gGGGCGCUACUGGaa-------------GAG-CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 79003 0.73 0.629696
Target:  5'- gCCCCgGUGAUGGCggagaaCUUCUUGGACAUg- -3'
miRNA:   3'- -GGGG-CGCUACUG------GAAGAGCCUGUAgg -5'
25920 5' -54.4 NC_005337.1 + 31272 0.73 0.660348
Target:  5'- aCCUGCG--GGCCgcgCUCGGGCAcgUCCg -3'
miRNA:   3'- gGGGCGCuaCUGGaa-GAGCCUGU--AGG- -5'
25920 5' -54.4 NC_005337.1 + 130256 0.73 0.670531
Target:  5'- uCCCCGCcAUGAgCCUgCg-GGACGUCCu -3'
miRNA:   3'- -GGGGCGcUACU-GGAaGagCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 22640 0.72 0.700858
Target:  5'- aUCCGCGA-GGCCUUCggcgCGGACGc-- -3'
miRNA:   3'- gGGGCGCUaCUGGAAGa---GCCUGUagg -5'
25920 5' -54.4 NC_005337.1 + 91192 0.72 0.700858
Target:  5'- ---gGCGAUGGCCgcggUGGACAUCCg -3'
miRNA:   3'- ggggCGCUACUGGaagaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 69102 0.72 0.700858
Target:  5'- aCCUCGUGGUGcACCUcgUCUgCGGGCGagCCg -3'
miRNA:   3'- -GGGGCGCUAC-UGGA--AGA-GCCUGUa-GG- -5'
25920 5' -54.4 NC_005337.1 + 49253 0.72 0.720802
Target:  5'- aCCCGCGAgGGCUcgCUggUGGACAUCg -3'
miRNA:   3'- gGGGCGCUaCUGGaaGA--GCCUGUAGg -5'
25920 5' -54.4 NC_005337.1 + 48810 0.71 0.740443
Target:  5'- aCCUGCac-GGCCgaCUCGGugAUCCa -3'
miRNA:   3'- gGGGCGcuaCUGGaaGAGCCugUAGG- -5'
25920 5' -54.4 NC_005337.1 + 113504 0.71 0.740443
Target:  5'- uCCCCGCGAagcgcgUGGCCgcggccCUgGGcAUAUCCa -3'
miRNA:   3'- -GGGGCGCU------ACUGGaa----GAgCC-UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 125862 0.71 0.749162
Target:  5'- uCCCCGCGGUG-------CGGACAUCCu -3'
miRNA:   3'- -GGGGCGCUACuggaagaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 53046 0.71 0.750126
Target:  5'- gCCgGCGcaacGGCCUggUCUCGGACA-CCg -3'
miRNA:   3'- gGGgCGCua--CUGGA--AGAGCCUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 43100 0.71 0.750126
Target:  5'- gCCCGgGAUGAagUUCgUGGACAUCUc -3'
miRNA:   3'- gGGGCgCUACUggAAGaGCCUGUAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.