Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25920 | 5' | -54.4 | NC_005337.1 | + | 18396 | 0.71 | 0.769173 |
Target: 5'- -gCCGCGGUacucGACCaUCUCGGACGg-- -3' miRNA: 3'- ggGGCGCUA----CUGGaAGAGCCUGUagg -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 25274 | 0.71 | 0.778518 |
Target: 5'- uUCCGCGA-GcCCUcCUCGGccaGCGUCCg -3' miRNA: 3'- gGGGCGCUaCuGGAaGAGCC---UGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 17829 | 0.7 | 0.787732 |
Target: 5'- gCgCGCGgcGAucuCCUUCUCGGACccgCCg -3' miRNA: 3'- gGgGCGCuaCU---GGAAGAGCCUGua-GG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 51918 | 0.7 | 0.805732 |
Target: 5'- -gUCGCGGccGACCUUCggcaCGGGCAUCg -3' miRNA: 3'- ggGGCGCUa-CUGGAAGa---GCCUGUAGg -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 127159 | 0.7 | 0.805732 |
Target: 5'- aUCCGCGcgGGCg----CGGACGUCCg -3' miRNA: 3'- gGGGCGCuaCUGgaagaGCCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 124170 | 0.7 | 0.814501 |
Target: 5'- -aCCGCG-UGACCUUCgUGGACcUCg -3' miRNA: 3'- ggGGCGCuACUGGAAGaGCCUGuAGg -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 42493 | 0.7 | 0.814501 |
Target: 5'- aCgCGCGAgcuCCUgaagCUgCGGACGUCCa -3' miRNA: 3'- gGgGCGCUacuGGAa---GA-GCCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 128211 | 0.7 | 0.814501 |
Target: 5'- uCCUgGCGccgcucGUGGCCgcgggCgCGGACAUCCa -3' miRNA: 3'- -GGGgCGC------UACUGGaa---GaGCCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 36930 | 0.7 | 0.823104 |
Target: 5'- aCCCGCGcgGACUUUC----GCGUCCa -3' miRNA: 3'- gGGGCGCuaCUGGAAGagccUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 41503 | 0.7 | 0.8307 |
Target: 5'- gCCCGCGAUGGagcgcauCCgcg-CGGcCAUCCg -3' miRNA: 3'- gGGGCGCUACU-------GGaagaGCCuGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 84663 | 0.7 | 0.831535 |
Target: 5'- gUCCGCG-UGAUCUggUCgUCGGACGgggCCg -3' miRNA: 3'- gGGGCGCuACUGGA--AG-AGCCUGUa--GG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 125093 | 0.69 | 0.839783 |
Target: 5'- aCCgCGUGGccaagcaccUGACCggggUCUCcGGCAUCCa -3' miRNA: 3'- -GGgGCGCU---------ACUGGa---AGAGcCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 7128 | 0.69 | 0.847844 |
Target: 5'- gCCCGCGcgGAUCagCacgCGGACgauGUCCg -3' miRNA: 3'- gGGGCGCuaCUGGaaGa--GCCUG---UAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 53960 | 0.69 | 0.847844 |
Target: 5'- gCUCCGCGGUGGCgUcuagCUUGGAC--CCg -3' miRNA: 3'- -GGGGCGCUACUGgAa---GAGCCUGuaGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 127241 | 0.69 | 0.847844 |
Target: 5'- gCCCCGaCGugcucGGCCUgaugCUggaggcgggcgCGGACGUCCg -3' miRNA: 3'- -GGGGC-GCua---CUGGAa---GA-----------GCCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 131579 | 0.69 | 0.855709 |
Target: 5'- cCUCCGCGuccccacGCCgcagCUcCGGACGUCCu -3' miRNA: 3'- -GGGGCGCuac----UGGaa--GA-GCCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 73525 | 0.69 | 0.863372 |
Target: 5'- aCCCGCGAggcGGCa--CUCGaGuACAUCCg -3' miRNA: 3'- gGGGCGCUa--CUGgaaGAGC-C-UGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 3260 | 0.69 | 0.863372 |
Target: 5'- aCUCUGUGGaGGCgUcgaUCUCGGACAUgCCg -3' miRNA: 3'- -GGGGCGCUaCUGgA---AGAGCCUGUA-GG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 77815 | 0.68 | 0.877354 |
Target: 5'- gCCCGUa--GACCUuggUCUCGGccaccgcGCGUCCa -3' miRNA: 3'- gGGGCGcuaCUGGA---AGAGCC-------UGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 30107 | 0.68 | 0.878069 |
Target: 5'- gCgCGCGcaccuUGACCUUgUCGGugAggUCCg -3' miRNA: 3'- gGgGCGCu----ACUGGAAgAGCCugU--AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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