miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 122605 0.67 0.916779
Target:  5'- aCCaCGCGGgcggcggcgUGuuCUUCUCGGACGcgCCc -3'
miRNA:   3'- gGG-GCGCU---------ACugGAAGAGCCUGUa-GG- -5'
25920 5' -54.4 NC_005337.1 + 77112 0.67 0.922411
Target:  5'- aCCUGCGcgGACaugaUUCcgaCGGGCGUgCCg -3'
miRNA:   3'- gGGGCGCuaCUGg---AAGa--GCCUGUA-GG- -5'
25920 5' -54.4 NC_005337.1 + 131821 0.67 0.922411
Target:  5'- aCCCCGCGuuccacucgGugC-UCUCGGAgcugacCAUCUc -3'
miRNA:   3'- -GGGGCGCua-------CugGaAGAGCCU------GUAGG- -5'
25920 5' -54.4 NC_005337.1 + 90692 0.67 0.927806
Target:  5'- uCCCCGCGGUccaggaagacGACCagcUUCUCuguGGcggagacccGCGUCCa -3'
miRNA:   3'- -GGGGCGCUA----------CUGG---AAGAG---CC---------UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 114782 0.67 0.927806
Target:  5'- -aCCGUGAaGGCCUUCgccaUCGaacGCAUCCg -3'
miRNA:   3'- ggGGCGCUaCUGGAAG----AGCc--UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 6462 0.67 0.927806
Target:  5'- aCCCCcaguuggugGCGGUGACCagCgcgCGGACGa-- -3'
miRNA:   3'- -GGGG---------CGCUACUGGaaGa--GCCUGUagg -5'
25920 5' -54.4 NC_005337.1 + 61887 0.67 0.927806
Target:  5'- aCCCCGgGGgcucgcUGACCgcgaCGGcCGUCCg -3'
miRNA:   3'- -GGGGCgCU------ACUGGaagaGCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 77333 0.67 0.932961
Target:  5'- gUCCCGCGGcgagaUGGCCgccuccgcgCUCGGAg--CCg -3'
miRNA:   3'- -GGGGCGCU-----ACUGGaa-------GAGCCUguaGG- -5'
25920 5' -54.4 NC_005337.1 + 110553 0.67 0.932961
Target:  5'- gCUCCGCGgcGGCggUCa-GGAUGUCCg -3'
miRNA:   3'- -GGGGCGCuaCUGgaAGagCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 52219 0.67 0.937879
Target:  5'- gCCCCGgGAcgUGGCCgcgCUC-GACG-CCa -3'
miRNA:   3'- -GGGGCgCU--ACUGGaa-GAGcCUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 38858 0.66 0.942559
Target:  5'- gCCCCGCG-UGACgcUCgugCGGGCGcacaCCg -3'
miRNA:   3'- -GGGGCGCuACUGgaAGa--GCCUGUa---GG- -5'
25920 5' -54.4 NC_005337.1 + 3108 0.66 0.942559
Target:  5'- aCUCCGCGAccgcGACCgcggC-CGGccucGCGUCCa -3'
miRNA:   3'- -GGGGCGCUa---CUGGaa--GaGCC----UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 83348 0.66 0.942559
Target:  5'- gCCCCGgGAggccGACUggCUgCGGACcggCCg -3'
miRNA:   3'- -GGGGCgCUa---CUGGaaGA-GCCUGua-GG- -5'
25920 5' -54.4 NC_005337.1 + 95764 0.66 0.944365
Target:  5'- uCCCCGCGAUcgcggcgacgucgucGGCCagCUCGGcgacgcGCggCCc -3'
miRNA:   3'- -GGGGCGCUA---------------CUGGaaGAGCC------UGuaGG- -5'
25920 5' -54.4 NC_005337.1 + 131444 0.66 0.947003
Target:  5'- uCUCCGCGGaGGCCgcgCUCGGccuggGCuucUCCu -3'
miRNA:   3'- -GGGGCGCUaCUGGaa-GAGCC-----UGu--AGG- -5'
25920 5' -54.4 NC_005337.1 + 104773 0.66 0.947003
Target:  5'- aUCUCGCacggcgcGGCCUcaccgUCUCGGAgAUCCu -3'
miRNA:   3'- -GGGGCGcua----CUGGA-----AGAGCCUgUAGG- -5'
25920 5' -54.4 NC_005337.1 + 71881 0.66 0.947003
Target:  5'- gCuuGCGAccgugGACUUUCUCGuccgccGCGUCCu -3'
miRNA:   3'- gGggCGCUa----CUGGAAGAGCc-----UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 29670 0.66 0.947003
Target:  5'- cUCCCGCGGUGgcGCCguaugCUCGccgccGACGaCCg -3'
miRNA:   3'- -GGGGCGCUAC--UGGaa---GAGC-----CUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 97619 0.66 0.947003
Target:  5'- -gCCGCG---GCCUUCgcggacgGGACGUCCa -3'
miRNA:   3'- ggGGCGCuacUGGAAGag-----CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 60376 0.66 0.950804
Target:  5'- aCCCCGaucacguacgcguUGAUGACC---UCGGGCGauggaUCCa -3'
miRNA:   3'- -GGGGC-------------GCUACUGGaagAGCCUGU-----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.