Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
25920 | 5' | -54.4 | NC_005337.1 | + | 3108 | 0.66 | 0.942559 |
Target: 5'- aCUCCGCGAccgcGACCgcggC-CGGccucGCGUCCa -3' miRNA: 3'- -GGGGCGCUa---CUGGaa--GaGCC----UGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 38858 | 0.66 | 0.942559 |
Target: 5'- gCCCCGCG-UGACgcUCgugCGGGCGcacaCCg -3' miRNA: 3'- -GGGGCGCuACUGgaAGa--GCCUGUa---GG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 52219 | 0.67 | 0.937879 |
Target: 5'- gCCCCGgGAcgUGGCCgcgCUC-GACG-CCa -3' miRNA: 3'- -GGGGCgCU--ACUGGaa-GAGcCUGUaGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 110553 | 0.67 | 0.932961 |
Target: 5'- gCUCCGCGgcGGCggUCa-GGAUGUCCg -3' miRNA: 3'- -GGGGCGCuaCUGgaAGagCCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 77333 | 0.67 | 0.932961 |
Target: 5'- gUCCCGCGGcgagaUGGCCgccuccgcgCUCGGAg--CCg -3' miRNA: 3'- -GGGGCGCU-----ACUGGaa-------GAGCCUguaGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 61887 | 0.67 | 0.927806 |
Target: 5'- aCCCCGgGGgcucgcUGACCgcgaCGGcCGUCCg -3' miRNA: 3'- -GGGGCgCU------ACUGGaagaGCCuGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 6462 | 0.67 | 0.927806 |
Target: 5'- aCCCCcaguuggugGCGGUGACCagCgcgCGGACGa-- -3' miRNA: 3'- -GGGG---------CGCUACUGGaaGa--GCCUGUagg -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 114782 | 0.67 | 0.927806 |
Target: 5'- -aCCGUGAaGGCCUUCgccaUCGaacGCAUCCg -3' miRNA: 3'- ggGGCGCUaCUGGAAG----AGCc--UGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 90692 | 0.67 | 0.927806 |
Target: 5'- uCCCCGCGGUccaggaagacGACCagcUUCUCuguGGcggagacccGCGUCCa -3' miRNA: 3'- -GGGGCGCUA----------CUGG---AAGAG---CC---------UGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 77112 | 0.67 | 0.922411 |
Target: 5'- aCCUGCGcgGACaugaUUCcgaCGGGCGUgCCg -3' miRNA: 3'- gGGGCGCuaCUGg---AAGa--GCCUGUA-GG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 131821 | 0.67 | 0.922411 |
Target: 5'- aCCCCGCGuuccacucgGugC-UCUCGGAgcugacCAUCUc -3' miRNA: 3'- -GGGGCGCua-------CugGaAGAGCCU------GUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 43451 | 0.67 | 0.916779 |
Target: 5'- aCCCCGCGGUGuuCguggaCGGguucaGCGUCCu -3' miRNA: 3'- -GGGGCGCUACugGaaga-GCC-----UGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 122605 | 0.67 | 0.916779 |
Target: 5'- aCCaCGCGGgcggcggcgUGuuCUUCUCGGACGcgCCc -3' miRNA: 3'- gGG-GCGCU---------ACugGAAGAGCCUGUa-GG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 44517 | 0.67 | 0.916779 |
Target: 5'- uCUUCGgGGUGcCCaUCUCGGACGaggucaagaacUCCa -3' miRNA: 3'- -GGGGCgCUACuGGaAGAGCCUGU-----------AGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 97280 | 0.67 | 0.916779 |
Target: 5'- uCCCCGCGGcuggaGACCg---CGGAgAUCa -3' miRNA: 3'- -GGGGCGCUa----CUGGaagaGCCUgUAGg -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 103321 | 0.67 | 0.916779 |
Target: 5'- -aCCGCGAgGAgCggCUggaGGACAUCCu -3' miRNA: 3'- ggGGCGCUaCUgGaaGAg--CCUGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 36670 | 0.67 | 0.916779 |
Target: 5'- gCCgGCGAUGGCCagcgacUUCagcaCGG-CGUCCa -3' miRNA: 3'- gGGgCGCUACUGG------AAGa---GCCuGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 97809 | 0.67 | 0.916779 |
Target: 5'- gUCCaCGGUGuuCUUCUCGGGCAcggggcuggaccUCCc -3' miRNA: 3'- gGGGcGCUACugGAAGAGCCUGU------------AGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 27304 | 0.68 | 0.910908 |
Target: 5'- aCCCaGCGGUGuuaCUUCaUUGG-CGUCCg -3' miRNA: 3'- gGGG-CGCUACug-GAAG-AGCCuGUAGG- -5' |
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25920 | 5' | -54.4 | NC_005337.1 | + | 25392 | 0.68 | 0.910908 |
Target: 5'- gCgCCGCGGUGGCggcCUCGGAguUCg -3' miRNA: 3'- -GgGGCGCUACUGgaaGAGCCUguAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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