miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 48164 0.68 0.910908
Target:  5'- gCCCCGCGAgugcuggGACCcggagugcgUCUCcggGGACGUg- -3'
miRNA:   3'- -GGGGCGCUa------CUGGa--------AGAG---CCUGUAgg -5'
25920 5' -54.4 NC_005337.1 + 124953 0.68 0.910908
Target:  5'- gUCCCGCGuc-GCCggUCUCGG-CAuguUCCu -3'
miRNA:   3'- -GGGGCGCuacUGGa-AGAGCCuGU---AGG- -5'
25920 5' -54.4 NC_005337.1 + 92586 0.68 0.910908
Target:  5'- gCUCCG-GAcGugCUUCgacgacgUGGACGUCCg -3'
miRNA:   3'- -GGGGCgCUaCugGAAGa------GCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 16969 0.68 0.910308
Target:  5'- uCCCCGCGGUguucgcguacgcGACCacgUCgaacauaUCGGGCGgggCCu -3'
miRNA:   3'- -GGGGCGCUA------------CUGGa--AG-------AGCCUGUa--GG- -5'
25920 5' -54.4 NC_005337.1 + 35895 0.68 0.904802
Target:  5'- uCCuuGaCGAUGACCagCaCGG-CGUCCa -3'
miRNA:   3'- -GGggC-GCUACUGGaaGaGCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 103583 0.68 0.904802
Target:  5'- uUCCGCGAcggguacgUGGCCUccUCgcuggUGGGCAUCa -3'
miRNA:   3'- gGGGCGCU--------ACUGGA--AGa----GCCUGUAGg -5'
25920 5' -54.4 NC_005337.1 + 104597 0.68 0.898461
Target:  5'- cCUUCGCGGcccgGAUCUUCuUCGGGCcgCUg -3'
miRNA:   3'- -GGGGCGCUa---CUGGAAG-AGCCUGuaGG- -5'
25920 5' -54.4 NC_005337.1 + 118494 0.68 0.89122
Target:  5'- uCCCgGCGGUGACCgug-CGGgugaccgGCGUCg -3'
miRNA:   3'- -GGGgCGCUACUGGaagaGCC-------UGUAGg -5'
25920 5' -54.4 NC_005337.1 + 70113 0.68 0.885091
Target:  5'- gCCagCGUGGUGGCCUgggaaacCUCGuACAUCCc -3'
miRNA:   3'- -GGg-GCGCUACUGGAa------GAGCcUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 28295 0.68 0.885091
Target:  5'- cCCCaCGcCGGUGACCUcCUCGucgcgcgcGuCGUCCa -3'
miRNA:   3'- -GGG-GC-GCUACUGGAaGAGC--------CuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 98732 0.68 0.878069
Target:  5'- gCCCUGCGcgugcUGACCgUCaUGGACuUCCu -3'
miRNA:   3'- -GGGGCGCu----ACUGGaAGaGCCUGuAGG- -5'
25920 5' -54.4 NC_005337.1 + 112633 0.68 0.878069
Target:  5'- gCCCCaGCGAgaagauggaGACCUUCUgcUGGAacUCCg -3'
miRNA:   3'- -GGGG-CGCUa--------CUGGAAGA--GCCUguAGG- -5'
25920 5' -54.4 NC_005337.1 + 30107 0.68 0.878069
Target:  5'- gCgCGCGcaccuUGACCUUgUCGGugAggUCCg -3'
miRNA:   3'- gGgGCGCu----ACUGGAAgAGCCugU--AGG- -5'
25920 5' -54.4 NC_005337.1 + 77815 0.68 0.877354
Target:  5'- gCCCGUa--GACCUuggUCUCGGccaccgcGCGUCCa -3'
miRNA:   3'- gGGGCGcuaCUGGA---AGAGCC-------UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 3260 0.69 0.863372
Target:  5'- aCUCUGUGGaGGCgUcgaUCUCGGACAUgCCg -3'
miRNA:   3'- -GGGGCGCUaCUGgA---AGAGCCUGUA-GG- -5'
25920 5' -54.4 NC_005337.1 + 73525 0.69 0.863372
Target:  5'- aCCCGCGAggcGGCa--CUCGaGuACAUCCg -3'
miRNA:   3'- gGGGCGCUa--CUGgaaGAGC-C-UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 131579 0.69 0.855709
Target:  5'- cCUCCGCGuccccacGCCgcagCUcCGGACGUCCu -3'
miRNA:   3'- -GGGGCGCuac----UGGaa--GA-GCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 127241 0.69 0.847844
Target:  5'- gCCCCGaCGugcucGGCCUgaugCUggaggcgggcgCGGACGUCCg -3'
miRNA:   3'- -GGGGC-GCua---CUGGAa---GA-----------GCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 53960 0.69 0.847844
Target:  5'- gCUCCGCGGUGGCgUcuagCUUGGAC--CCg -3'
miRNA:   3'- -GGGGCGCUACUGgAa---GAGCCUGuaGG- -5'
25920 5' -54.4 NC_005337.1 + 7128 0.69 0.847844
Target:  5'- gCCCGCGcgGAUCagCacgCGGACgauGUCCg -3'
miRNA:   3'- gGGGCGCuaCUGGaaGa--GCCUG---UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.