miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 125093 0.69 0.839783
Target:  5'- aCCgCGUGGccaagcaccUGACCggggUCUCcGGCAUCCa -3'
miRNA:   3'- -GGgGCGCU---------ACUGGa---AGAGcCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 84663 0.7 0.831535
Target:  5'- gUCCGCG-UGAUCUggUCgUCGGACGgggCCg -3'
miRNA:   3'- gGGGCGCuACUGGA--AG-AGCCUGUa--GG- -5'
25920 5' -54.4 NC_005337.1 + 41503 0.7 0.8307
Target:  5'- gCCCGCGAUGGagcgcauCCgcg-CGGcCAUCCg -3'
miRNA:   3'- gGGGCGCUACU-------GGaagaGCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 36930 0.7 0.823104
Target:  5'- aCCCGCGcgGACUUUC----GCGUCCa -3'
miRNA:   3'- gGGGCGCuaCUGGAAGagccUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 128211 0.7 0.814501
Target:  5'- uCCUgGCGccgcucGUGGCCgcgggCgCGGACAUCCa -3'
miRNA:   3'- -GGGgCGC------UACUGGaa---GaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 124170 0.7 0.814501
Target:  5'- -aCCGCG-UGACCUUCgUGGACcUCg -3'
miRNA:   3'- ggGGCGCuACUGGAAGaGCCUGuAGg -5'
25920 5' -54.4 NC_005337.1 + 42493 0.7 0.814501
Target:  5'- aCgCGCGAgcuCCUgaagCUgCGGACGUCCa -3'
miRNA:   3'- gGgGCGCUacuGGAa---GA-GCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 51918 0.7 0.805732
Target:  5'- -gUCGCGGccGACCUUCggcaCGGGCAUCg -3'
miRNA:   3'- ggGGCGCUa-CUGGAAGa---GCCUGUAGg -5'
25920 5' -54.4 NC_005337.1 + 127159 0.7 0.805732
Target:  5'- aUCCGCGcgGGCg----CGGACGUCCg -3'
miRNA:   3'- gGGGCGCuaCUGgaagaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 17829 0.7 0.787732
Target:  5'- gCgCGCGgcGAucuCCUUCUCGGACccgCCg -3'
miRNA:   3'- gGgGCGCuaCU---GGAAGAGCCUGua-GG- -5'
25920 5' -54.4 NC_005337.1 + 25274 0.71 0.778518
Target:  5'- uUCCGCGA-GcCCUcCUCGGccaGCGUCCg -3'
miRNA:   3'- gGGGCGCUaCuGGAaGAGCC---UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 18396 0.71 0.769173
Target:  5'- -gCCGCGGUacucGACCaUCUCGGACGg-- -3'
miRNA:   3'- ggGGCGCUA----CUGGaAGAGCCUGUagg -5'
25920 5' -54.4 NC_005337.1 + 53046 0.71 0.750126
Target:  5'- gCCgGCGcaacGGCCUggUCUCGGACA-CCg -3'
miRNA:   3'- gGGgCGCua--CUGGA--AGAGCCUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 43100 0.71 0.750126
Target:  5'- gCCCGgGAUGAagUUCgUGGACAUCUc -3'
miRNA:   3'- gGGGCgCUACUggAAGaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 125862 0.71 0.749162
Target:  5'- uCCCCGCGGUG-------CGGACAUCCu -3'
miRNA:   3'- -GGGGCGCUACuggaagaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 113504 0.71 0.740443
Target:  5'- uCCCCGCGAagcgcgUGGCCgcggccCUgGGcAUAUCCa -3'
miRNA:   3'- -GGGGCGCU------ACUGGaa----GAgCC-UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 48810 0.71 0.740443
Target:  5'- aCCUGCac-GGCCgaCUCGGugAUCCa -3'
miRNA:   3'- gGGGCGcuaCUGGaaGAGCCugUAGG- -5'
25920 5' -54.4 NC_005337.1 + 49253 0.72 0.720802
Target:  5'- aCCCGCGAgGGCUcgCUggUGGACAUCg -3'
miRNA:   3'- gGGGCGCUaCUGGaaGA--GCCUGUAGg -5'
25920 5' -54.4 NC_005337.1 + 69102 0.72 0.700858
Target:  5'- aCCUCGUGGUGcACCUcgUCUgCGGGCGagCCg -3'
miRNA:   3'- -GGGGCGCUAC-UGGA--AGA-GCCUGUa-GG- -5'
25920 5' -54.4 NC_005337.1 + 22640 0.72 0.700858
Target:  5'- aUCCGCGA-GGCCUUCggcgCGGACGc-- -3'
miRNA:   3'- gGGGCGCUaCUGGAAGa---GCCUGUagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.