miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 1280 0.66 0.951215
Target:  5'- gCCCGCGGaGGCgggUCggCGGGCAgguugUCCa -3'
miRNA:   3'- gGGGCGCUaCUGga-AGa-GCCUGU-----AGG- -5'
25920 5' -54.4 NC_005337.1 + 3108 0.66 0.942559
Target:  5'- aCUCCGCGAccgcGACCgcggC-CGGccucGCGUCCa -3'
miRNA:   3'- -GGGGCGCUa---CUGGaa--GaGCC----UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 3260 0.69 0.863372
Target:  5'- aCUCUGUGGaGGCgUcgaUCUCGGACAUgCCg -3'
miRNA:   3'- -GGGGCGCUaCUGgA---AGAGCCUGUA-GG- -5'
25920 5' -54.4 NC_005337.1 + 6462 0.67 0.927806
Target:  5'- aCCCCcaguuggugGCGGUGACCagCgcgCGGACGa-- -3'
miRNA:   3'- -GGGG---------CGCUACUGGaaGa--GCCUGUagg -5'
25920 5' -54.4 NC_005337.1 + 7128 0.69 0.847844
Target:  5'- gCCCGCGcgGAUCagCacgCGGACgauGUCCg -3'
miRNA:   3'- gGGGCGCuaCUGGaaGa--GCCUG---UAGG- -5'
25920 5' -54.4 NC_005337.1 + 10120 0.66 0.958952
Target:  5'- uCUCCGCGucgcucucGCCgUCcUGGGCGUCCa -3'
miRNA:   3'- -GGGGCGCuac-----UGGaAGaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 11997 0.74 0.59906
Target:  5'- cCUCCGCGucccgGuCCUUgCUCuGGACGUCCa -3'
miRNA:   3'- -GGGGCGCua---CuGGAA-GAG-CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 16969 0.68 0.910308
Target:  5'- uCCCCGCGGUguucgcguacgcGACCacgUCgaacauaUCGGGCGgggCCu -3'
miRNA:   3'- -GGGGCGCUA------------CUGGa--AG-------AGCCUGUa--GG- -5'
25920 5' -54.4 NC_005337.1 + 17829 0.7 0.787732
Target:  5'- gCgCGCGgcGAucuCCUUCUCGGACccgCCg -3'
miRNA:   3'- gGgGCGCuaCU---GGAAGAGCCUGua-GG- -5'
25920 5' -54.4 NC_005337.1 + 18396 0.71 0.769173
Target:  5'- -gCCGCGGUacucGACCaUCUCGGACGg-- -3'
miRNA:   3'- ggGGCGCUA----CUGGaAGAGCCUGUagg -5'
25920 5' -54.4 NC_005337.1 + 19331 0.74 0.616406
Target:  5'- gUCUGCGAUGGCCagcagcuccgcguggCUCaGGGCGUCCa -3'
miRNA:   3'- gGGGCGCUACUGGaa-------------GAG-CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 22640 0.72 0.700858
Target:  5'- aUCCGCGA-GGCCUUCggcgCGGACGc-- -3'
miRNA:   3'- gGGGCGCUaCUGGAAGa---GCCUGUagg -5'
25920 5' -54.4 NC_005337.1 + 24917 0.66 0.958952
Target:  5'- cCUCCGUGuacUGcACCgcCUCGGGCGUgCu -3'
miRNA:   3'- -GGGGCGCu--AC-UGGaaGAGCCUGUAgG- -5'
25920 5' -54.4 NC_005337.1 + 25274 0.71 0.778518
Target:  5'- uUCCGCGA-GcCCUcCUCGGccaGCGUCCg -3'
miRNA:   3'- gGGGCGCUaCuGGAaGAGCC---UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 25392 0.68 0.910908
Target:  5'- gCgCCGCGGUGGCggcCUCGGAguUCg -3'
miRNA:   3'- -GgGGCGCUACUGgaaGAGCCUguAGg -5'
25920 5' -54.4 NC_005337.1 + 27304 0.68 0.910908
Target:  5'- aCCCaGCGGUGuuaCUUCaUUGG-CGUCCg -3'
miRNA:   3'- gGGG-CGCUACug-GAAG-AGCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 28295 0.68 0.885091
Target:  5'- cCCCaCGcCGGUGACCUcCUCGucgcgcgcGuCGUCCa -3'
miRNA:   3'- -GGG-GC-GCUACUGGAaGAGC--------CuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 29670 0.66 0.947003
Target:  5'- cUCCCGCGGUGgcGCCguaugCUCGccgccGACGaCCg -3'
miRNA:   3'- -GGGGCGCUAC--UGGaa---GAGC-----CUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 30107 0.68 0.878069
Target:  5'- gCgCGCGcaccuUGACCUUgUCGGugAggUCCg -3'
miRNA:   3'- gGgGCGCu----ACUGGAAgAGCCugU--AGG- -5'
25920 5' -54.4 NC_005337.1 + 31272 0.73 0.660348
Target:  5'- aCCUGCG--GGCCgcgCUCGGGCAcgUCCg -3'
miRNA:   3'- gGGGCGCuaCUGGaa-GAGCCUGU--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.