miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 35895 0.68 0.904802
Target:  5'- uCCuuGaCGAUGACCagCaCGG-CGUCCa -3'
miRNA:   3'- -GGggC-GCUACUGGaaGaGCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 36151 0.66 0.955197
Target:  5'- gCCgCCGCGGUG-CCUggUCaCGGugGaCCg -3'
miRNA:   3'- -GG-GGCGCUACuGGA--AGaGCCugUaGG- -5'
25920 5' -54.4 NC_005337.1 + 36670 0.67 0.916779
Target:  5'- gCCgGCGAUGGCCagcgacUUCagcaCGG-CGUCCa -3'
miRNA:   3'- gGGgCGCUACUGG------AAGa---GCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 36716 0.77 0.43433
Target:  5'- cCUCCGCGAgGAUCUUCUCGGugAa-- -3'
miRNA:   3'- -GGGGCGCUaCUGGAAGAGCCugUagg -5'
25920 5' -54.4 NC_005337.1 + 36930 0.7 0.823104
Target:  5'- aCCCGCGcgGACUUUC----GCGUCCa -3'
miRNA:   3'- gGGGCGCuaCUGGAAGagccUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 38858 0.66 0.942559
Target:  5'- gCCCCGCG-UGACgcUCgugCGGGCGcacaCCg -3'
miRNA:   3'- -GGGGCGCuACUGgaAGa--GCCUGUa---GG- -5'
25920 5' -54.4 NC_005337.1 + 41503 0.7 0.8307
Target:  5'- gCCCGCGAUGGagcgcauCCgcg-CGGcCAUCCg -3'
miRNA:   3'- gGGGCGCUACU-------GGaagaGCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 42493 0.7 0.814501
Target:  5'- aCgCGCGAgcuCCUgaagCUgCGGACGUCCa -3'
miRNA:   3'- gGgGCGCUacuGGAa---GA-GCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 43100 0.71 0.750126
Target:  5'- gCCCGgGAUGAagUUCgUGGACAUCUc -3'
miRNA:   3'- gGGGCgCUACUggAAGaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 43451 0.67 0.916779
Target:  5'- aCCCCGCGGUGuuCguggaCGGguucaGCGUCCu -3'
miRNA:   3'- -GGGGCGCUACugGaaga-GCC-----UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 44517 0.67 0.916779
Target:  5'- uCUUCGgGGUGcCCaUCUCGGACGaggucaagaacUCCa -3'
miRNA:   3'- -GGGGCgCUACuGGaAGAGCCUGU-----------AGG- -5'
25920 5' -54.4 NC_005337.1 + 48164 0.68 0.910908
Target:  5'- gCCCCGCGAgugcuggGACCcggagugcgUCUCcggGGACGUg- -3'
miRNA:   3'- -GGGGCGCUa------CUGGa--------AGAG---CCUGUAgg -5'
25920 5' -54.4 NC_005337.1 + 48810 0.71 0.740443
Target:  5'- aCCUGCac-GGCCgaCUCGGugAUCCa -3'
miRNA:   3'- gGGGCGcuaCUGGaaGAGCCugUAGG- -5'
25920 5' -54.4 NC_005337.1 + 49253 0.72 0.720802
Target:  5'- aCCCGCGAgGGCUcgCUggUGGACAUCg -3'
miRNA:   3'- gGGGCGCUaCUGGaaGA--GCCUGUAGg -5'
25920 5' -54.4 NC_005337.1 + 51918 0.7 0.805732
Target:  5'- -gUCGCGGccGACCUUCggcaCGGGCAUCg -3'
miRNA:   3'- ggGGCGCUa-CUGGAAGa---GCCUGUAGg -5'
25920 5' -54.4 NC_005337.1 + 52219 0.67 0.937879
Target:  5'- gCCCCGgGAcgUGGCCgcgCUC-GACG-CCa -3'
miRNA:   3'- -GGGGCgCU--ACUGGaa-GAGcCUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 53046 0.71 0.750126
Target:  5'- gCCgGCGcaacGGCCUggUCUCGGACA-CCg -3'
miRNA:   3'- gGGgCGCua--CUGGA--AGAGCCUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 53960 0.69 0.847844
Target:  5'- gCUCCGCGGUGGCgUcuagCUUGGAC--CCg -3'
miRNA:   3'- -GGGGCGCUACUGgAa---GAGCCUGuaGG- -5'
25920 5' -54.4 NC_005337.1 + 57123 0.66 0.955197
Target:  5'- aCCCCGUGGUcGCCgccagCcUGGACG-CCg -3'
miRNA:   3'- -GGGGCGCUAcUGGaa---GaGCCUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 60376 0.66 0.950804
Target:  5'- aCCCCGaucacguacgcguUGAUGACC---UCGGGCGauggaUCCa -3'
miRNA:   3'- -GGGGC-------------GCUACUGGaagAGCCUGU-----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.