miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 92586 0.68 0.910908
Target:  5'- gCUCCG-GAcGugCUUCgacgacgUGGACGUCCg -3'
miRNA:   3'- -GGGGCgCUaCugGAAGa------GCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 95764 0.66 0.944365
Target:  5'- uCCCCGCGAUcgcggcgacgucgucGGCCagCUCGGcgacgcGCggCCc -3'
miRNA:   3'- -GGGGCGCUA---------------CUGGaaGAGCC------UGuaGG- -5'
25920 5' -54.4 NC_005337.1 + 97280 0.67 0.916779
Target:  5'- uCCCCGCGGcuggaGACCg---CGGAgAUCa -3'
miRNA:   3'- -GGGGCGCUa----CUGGaagaGCCUgUAGg -5'
25920 5' -54.4 NC_005337.1 + 97619 0.66 0.947003
Target:  5'- -gCCGCG---GCCUUCgcggacgGGACGUCCa -3'
miRNA:   3'- ggGGCGCuacUGGAAGag-----CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 97809 0.67 0.916779
Target:  5'- gUCCaCGGUGuuCUUCUCGGGCAcggggcuggaccUCCc -3'
miRNA:   3'- gGGGcGCUACugGAAGAGCCUGU------------AGG- -5'
25920 5' -54.4 NC_005337.1 + 98690 0.66 0.955197
Target:  5'- cUCCgGCGggGAuCCgcCUCGcuaGGCAUCCg -3'
miRNA:   3'- -GGGgCGCuaCU-GGaaGAGC---CUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 98732 0.68 0.878069
Target:  5'- gCCCUGCGcgugcUGACCgUCaUGGACuUCCu -3'
miRNA:   3'- -GGGGCGCu----ACUGGaAGaGCCUGuAGG- -5'
25920 5' -54.4 NC_005337.1 + 103203 0.75 0.568641
Target:  5'- aCCCCGCGAucgUGgacGCCUUCgugcUGGACAUgCg -3'
miRNA:   3'- -GGGGCGCU---AC---UGGAAGa---GCCUGUAgG- -5'
25920 5' -54.4 NC_005337.1 + 103321 0.67 0.916779
Target:  5'- -aCCGCGAgGAgCggCUggaGGACAUCCu -3'
miRNA:   3'- ggGGCGCUaCUgGaaGAg--CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 103416 1.14 0.002016
Target:  5'- uCCCCGCGAUGACCUUCUCGGACAUCCa -3'
miRNA:   3'- -GGGGCGCUACUGGAAGAGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 103583 0.68 0.904802
Target:  5'- uUCCGCGAcggguacgUGGCCUccUCgcuggUGGGCAUCa -3'
miRNA:   3'- gGGGCGCU--------ACUGGA--AGa----GCCUGUAGg -5'
25920 5' -54.4 NC_005337.1 + 104597 0.68 0.898461
Target:  5'- cCUUCGCGGcccgGAUCUUCuUCGGGCcgCUg -3'
miRNA:   3'- -GGGGCGCUa---CUGGAAG-AGCCUGuaGG- -5'
25920 5' -54.4 NC_005337.1 + 104773 0.66 0.947003
Target:  5'- aUCUCGCacggcgcGGCCUcaccgUCUCGGAgAUCCu -3'
miRNA:   3'- -GGGGCGcua----CUGGA-----AGAGCCUgUAGG- -5'
25920 5' -54.4 NC_005337.1 + 110553 0.67 0.932961
Target:  5'- gCUCCGCGgcGGCggUCa-GGAUGUCCg -3'
miRNA:   3'- -GGGGCGCuaCUGgaAGagCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 112633 0.68 0.878069
Target:  5'- gCCCCaGCGAgaagauggaGACCUUCUgcUGGAacUCCg -3'
miRNA:   3'- -GGGG-CGCUa--------CUGGAAGA--GCCUguAGG- -5'
25920 5' -54.4 NC_005337.1 + 113504 0.71 0.740443
Target:  5'- uCCCCGCGAagcgcgUGGCCgcggccCUgGGcAUAUCCa -3'
miRNA:   3'- -GGGGCGCU------ACUGGaa----GAgCC-UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 114782 0.67 0.927806
Target:  5'- -aCCGUGAaGGCCUUCgccaUCGaacGCAUCCg -3'
miRNA:   3'- ggGGCGCUaCUGGAAG----AGCc--UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 118494 0.68 0.89122
Target:  5'- uCCCgGCGGUGACCgug-CGGgugaccgGCGUCg -3'
miRNA:   3'- -GGGgCGCUACUGGaagaGCC-------UGUAGg -5'
25920 5' -54.4 NC_005337.1 + 122605 0.67 0.916779
Target:  5'- aCCaCGCGGgcggcggcgUGuuCUUCUCGGACGcgCCc -3'
miRNA:   3'- gGG-GCGCU---------ACugGAAGAGCCUGUa-GG- -5'
25920 5' -54.4 NC_005337.1 + 123683 0.78 0.407945
Target:  5'- cCCCCGCGGcggGACCgggcUCgucgCGGAgAUCCg -3'
miRNA:   3'- -GGGGCGCUa--CUGGa---AGa---GCCUgUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.