miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 131821 0.67 0.922411
Target:  5'- aCCCCGCGuuccacucgGugC-UCUCGGAgcugacCAUCUc -3'
miRNA:   3'- -GGGGCGCua-------CugGaAGAGCCU------GUAGG- -5'
25920 5' -54.4 NC_005337.1 + 131579 0.69 0.855709
Target:  5'- cCUCCGCGuccccacGCCgcagCUcCGGACGUCCu -3'
miRNA:   3'- -GGGGCGCuac----UGGaa--GA-GCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 131444 0.66 0.947003
Target:  5'- uCUCCGCGGaGGCCgcgCUCGGccuggGCuucUCCu -3'
miRNA:   3'- -GGGGCGCUaCUGGaa-GAGCC-----UGu--AGG- -5'
25920 5' -54.4 NC_005337.1 + 130256 0.73 0.670531
Target:  5'- uCCCCGCcAUGAgCCUgCg-GGACGUCCu -3'
miRNA:   3'- -GGGGCGcUACU-GGAaGagCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 128211 0.7 0.814501
Target:  5'- uCCUgGCGccgcucGUGGCCgcgggCgCGGACAUCCa -3'
miRNA:   3'- -GGGgCGC------UACUGGaa---GaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 127241 0.69 0.847844
Target:  5'- gCCCCGaCGugcucGGCCUgaugCUggaggcgggcgCGGACGUCCg -3'
miRNA:   3'- -GGGGC-GCua---CUGGAa---GA-----------GCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 127159 0.7 0.805732
Target:  5'- aUCCGCGcgGGCg----CGGACGUCCg -3'
miRNA:   3'- gGGGCGCuaCUGgaagaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 125862 0.71 0.749162
Target:  5'- uCCCCGCGGUG-------CGGACAUCCu -3'
miRNA:   3'- -GGGGCGCUACuggaagaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 125438 0.66 0.955197
Target:  5'- gCCCCGUGcucgugGACUcugugUUCgagCGGAuCAUCCc -3'
miRNA:   3'- -GGGGCGCua----CUGG-----AAGa--GCCU-GUAGG- -5'
25920 5' -54.4 NC_005337.1 + 125093 0.69 0.839783
Target:  5'- aCCgCGUGGccaagcaccUGACCggggUCUCcGGCAUCCa -3'
miRNA:   3'- -GGgGCGCU---------ACUGGa---AGAGcCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 124953 0.68 0.910908
Target:  5'- gUCCCGCGuc-GCCggUCUCGG-CAuguUCCu -3'
miRNA:   3'- -GGGGCGCuacUGGa-AGAGCCuGU---AGG- -5'
25920 5' -54.4 NC_005337.1 + 124170 0.7 0.814501
Target:  5'- -aCCGCG-UGACCUUCgUGGACcUCg -3'
miRNA:   3'- ggGGCGCuACUGGAAGaGCCUGuAGg -5'
25920 5' -54.4 NC_005337.1 + 123683 0.78 0.407945
Target:  5'- cCCCCGCGGcggGACCgggcUCgucgCGGAgAUCCg -3'
miRNA:   3'- -GGGGCGCUa--CUGGa---AGa---GCCUgUAGG- -5'
25920 5' -54.4 NC_005337.1 + 122605 0.67 0.916779
Target:  5'- aCCaCGCGGgcggcggcgUGuuCUUCUCGGACGcgCCc -3'
miRNA:   3'- gGG-GCGCU---------ACugGAAGAGCCUGUa-GG- -5'
25920 5' -54.4 NC_005337.1 + 118494 0.68 0.89122
Target:  5'- uCCCgGCGGUGACCgug-CGGgugaccgGCGUCg -3'
miRNA:   3'- -GGGgCGCUACUGGaagaGCC-------UGUAGg -5'
25920 5' -54.4 NC_005337.1 + 114782 0.67 0.927806
Target:  5'- -aCCGUGAaGGCCUUCgccaUCGaacGCAUCCg -3'
miRNA:   3'- ggGGCGCUaCUGGAAG----AGCc--UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 113504 0.71 0.740443
Target:  5'- uCCCCGCGAagcgcgUGGCCgcggccCUgGGcAUAUCCa -3'
miRNA:   3'- -GGGGCGCU------ACUGGaa----GAgCC-UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 112633 0.68 0.878069
Target:  5'- gCCCCaGCGAgaagauggaGACCUUCUgcUGGAacUCCg -3'
miRNA:   3'- -GGGG-CGCUa--------CUGGAAGA--GCCUguAGG- -5'
25920 5' -54.4 NC_005337.1 + 110553 0.67 0.932961
Target:  5'- gCUCCGCGgcGGCggUCa-GGAUGUCCg -3'
miRNA:   3'- -GGGGCGCuaCUGgaAGagCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 104773 0.66 0.947003
Target:  5'- aUCUCGCacggcgcGGCCUcaccgUCUCGGAgAUCCu -3'
miRNA:   3'- -GGGGCGcua----CUGGA-----AGAGCCUgUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.