miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 79003 0.73 0.629696
Target:  5'- gCCCCgGUGAUGGCggagaaCUUCUUGGACAUg- -3'
miRNA:   3'- -GGGG-CGCUACUG------GAAGAGCCUGUAgg -5'
25920 5' -54.4 NC_005337.1 + 77815 0.68 0.877354
Target:  5'- gCCCGUa--GACCUuggUCUCGGccaccgcGCGUCCa -3'
miRNA:   3'- gGGGCGcuaCUGGA---AGAGCC-------UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 77333 0.67 0.932961
Target:  5'- gUCCCGCGGcgagaUGGCCgccuccgcgCUCGGAg--CCg -3'
miRNA:   3'- -GGGGCGCU-----ACUGGaa-------GAGCCUguaGG- -5'
25920 5' -54.4 NC_005337.1 + 77112 0.67 0.922411
Target:  5'- aCCUGCGcgGACaugaUUCcgaCGGGCGUgCCg -3'
miRNA:   3'- gGGGCGCuaCUGg---AAGa--GCCUGUA-GG- -5'
25920 5' -54.4 NC_005337.1 + 73525 0.69 0.863372
Target:  5'- aCCCGCGAggcGGCa--CUCGaGuACAUCCg -3'
miRNA:   3'- gGGGCGCUa--CUGgaaGAGC-C-UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 71881 0.66 0.947003
Target:  5'- gCuuGCGAccgugGACUUUCUCGuccgccGCGUCCu -3'
miRNA:   3'- gGggCGCUa----CUGGAAGAGCc-----UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 70113 0.68 0.885091
Target:  5'- gCCagCGUGGUGGCCUgggaaacCUCGuACAUCCc -3'
miRNA:   3'- -GGg-GCGCUACUGGAa------GAGCcUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 69303 0.77 0.461677
Target:  5'- uUCgCGCGGgagaaGGCCUUCUCGGugGUCa -3'
miRNA:   3'- -GGgGCGCUa----CUGGAAGAGCCugUAGg -5'
25920 5' -54.4 NC_005337.1 + 69102 0.72 0.700858
Target:  5'- aCCUCGUGGUGcACCUcgUCUgCGGGCGagCCg -3'
miRNA:   3'- -GGGGCGCUAC-UGGA--AGA-GCCUGUa-GG- -5'
25920 5' -54.4 NC_005337.1 + 67761 0.66 0.951215
Target:  5'- aCUCGCuGAUGAaCUUCaCGGGCA-CCa -3'
miRNA:   3'- gGGGCG-CUACUgGAAGaGCCUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 61887 0.67 0.927806
Target:  5'- aCCCCGgGGgcucgcUGACCgcgaCGGcCGUCCg -3'
miRNA:   3'- -GGGGCgCU------ACUGGaagaGCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 61775 0.66 0.955197
Target:  5'- gUCCGUGGUacACCacCUCGGGCAugUCCg -3'
miRNA:   3'- gGGGCGCUAc-UGGaaGAGCCUGU--AGG- -5'
25920 5' -54.4 NC_005337.1 + 60376 0.66 0.950804
Target:  5'- aCCCCGaucacguacgcguUGAUGACC---UCGGGCGauggaUCCa -3'
miRNA:   3'- -GGGGC-------------GCUACUGGaagAGCCUGU-----AGG- -5'
25920 5' -54.4 NC_005337.1 + 57123 0.66 0.955197
Target:  5'- aCCCCGUGGUcGCCgccagCcUGGACG-CCg -3'
miRNA:   3'- -GGGGCGCUAcUGGaa---GaGCCUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 53960 0.69 0.847844
Target:  5'- gCUCCGCGGUGGCgUcuagCUUGGAC--CCg -3'
miRNA:   3'- -GGGGCGCUACUGgAa---GAGCCUGuaGG- -5'
25920 5' -54.4 NC_005337.1 + 53046 0.71 0.750126
Target:  5'- gCCgGCGcaacGGCCUggUCUCGGACA-CCg -3'
miRNA:   3'- gGGgCGCua--CUGGA--AGAGCCUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 52219 0.67 0.937879
Target:  5'- gCCCCGgGAcgUGGCCgcgCUC-GACG-CCa -3'
miRNA:   3'- -GGGGCgCU--ACUGGaa-GAGcCUGUaGG- -5'
25920 5' -54.4 NC_005337.1 + 51918 0.7 0.805732
Target:  5'- -gUCGCGGccGACCUUCggcaCGGGCAUCg -3'
miRNA:   3'- ggGGCGCUa-CUGGAAGa---GCCUGUAGg -5'
25920 5' -54.4 NC_005337.1 + 49253 0.72 0.720802
Target:  5'- aCCCGCGAgGGCUcgCUggUGGACAUCg -3'
miRNA:   3'- gGGGCGCUaCUGGaaGA--GCCUGUAGg -5'
25920 5' -54.4 NC_005337.1 + 48810 0.71 0.740443
Target:  5'- aCCUGCac-GGCCgaCUCGGugAUCCa -3'
miRNA:   3'- gGGGCGcuaCUGGaaGAGCCugUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.