miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 70113 0.68 0.885091
Target:  5'- gCCagCGUGGUGGCCUgggaaacCUCGuACAUCCc -3'
miRNA:   3'- -GGg-GCGCUACUGGAa------GAGCcUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 25274 0.71 0.778518
Target:  5'- uUCCGCGA-GcCCUcCUCGGccaGCGUCCg -3'
miRNA:   3'- gGGGCGCUaCuGGAaGAGCC---UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 17829 0.7 0.787732
Target:  5'- gCgCGCGgcGAucuCCUUCUCGGACccgCCg -3'
miRNA:   3'- gGgGCGCuaCU---GGAAGAGCCUGua-GG- -5'
25920 5' -54.4 NC_005337.1 + 128211 0.7 0.814501
Target:  5'- uCCUgGCGccgcucGUGGCCgcgggCgCGGACAUCCa -3'
miRNA:   3'- -GGGgCGC------UACUGGaa---GaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 36930 0.7 0.823104
Target:  5'- aCCCGCGcgGACUUUC----GCGUCCa -3'
miRNA:   3'- gGGGCGCuaCUGGAAGagccUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 41503 0.7 0.8307
Target:  5'- gCCCGCGAUGGagcgcauCCgcg-CGGcCAUCCg -3'
miRNA:   3'- gGGGCGCUACU-------GGaagaGCCuGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 53960 0.69 0.847844
Target:  5'- gCUCCGCGGUGGCgUcuagCUUGGAC--CCg -3'
miRNA:   3'- -GGGGCGCUACUGgAa---GAGCCUGuaGG- -5'
25920 5' -54.4 NC_005337.1 + 7128 0.69 0.847844
Target:  5'- gCCCGCGcgGAUCagCacgCGGACgauGUCCg -3'
miRNA:   3'- gGGGCGCuaCUGGaaGa--GCCUG---UAGG- -5'
25920 5' -54.4 NC_005337.1 + 73525 0.69 0.863372
Target:  5'- aCCCGCGAggcGGCa--CUCGaGuACAUCCg -3'
miRNA:   3'- gGGGCGCUa--CUGgaaGAGC-C-UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 18396 0.71 0.769173
Target:  5'- -gCCGCGGUacucGACCaUCUCGGACGg-- -3'
miRNA:   3'- ggGGCGCUA----CUGGaAGAGCCUGUagg -5'
25920 5' -54.4 NC_005337.1 + 125862 0.71 0.749162
Target:  5'- uCCCCGCGGUG-------CGGACAUCCu -3'
miRNA:   3'- -GGGGCGCUACuggaagaGCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 48810 0.71 0.740443
Target:  5'- aCCUGCac-GGCCgaCUCGGugAUCCa -3'
miRNA:   3'- gGGGCGcuaCUGGaaGAGCCugUAGG- -5'
25920 5' -54.4 NC_005337.1 + 123683 0.78 0.407945
Target:  5'- cCCCCGCGGcggGACCgggcUCgucgCGGAgAUCCg -3'
miRNA:   3'- -GGGGCGCUa--CUGGa---AGa---GCCUgUAGG- -5'
25920 5' -54.4 NC_005337.1 + 69303 0.77 0.461677
Target:  5'- uUCgCGCGGgagaaGGCCUUCUCGGugGUCa -3'
miRNA:   3'- -GGgGCGCUa----CUGGAAGAGCCugUAGg -5'
25920 5' -54.4 NC_005337.1 + 103203 0.75 0.568641
Target:  5'- aCCCCGCGAucgUGgacGCCUUCgugcUGGACAUgCg -3'
miRNA:   3'- -GGGGCGCU---AC---UGGAAGa---GCCUGUAgG- -5'
25920 5' -54.4 NC_005337.1 + 11997 0.74 0.59906
Target:  5'- cCUCCGCGucccgGuCCUUgCUCuGGACGUCCa -3'
miRNA:   3'- -GGGGCGCua---CuGGAA-GAG-CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 19331 0.74 0.616406
Target:  5'- gUCUGCGAUGGCCagcagcuccgcguggCUCaGGGCGUCCa -3'
miRNA:   3'- gGGGCGCUACUGGaa-------------GAG-CCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 79003 0.73 0.629696
Target:  5'- gCCCCgGUGAUGGCggagaaCUUCUUGGACAUg- -3'
miRNA:   3'- -GGGG-CGCUACUG------GAAGAGCCUGUAgg -5'
25920 5' -54.4 NC_005337.1 + 130256 0.73 0.670531
Target:  5'- uCCCCGCcAUGAgCCUgCg-GGACGUCCu -3'
miRNA:   3'- -GGGGCGcUACU-GGAaGagCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 22640 0.72 0.700858
Target:  5'- aUCCGCGA-GGCCUUCggcgCGGACGc-- -3'
miRNA:   3'- gGGGCGCUaCUGGAAGa---GCCUGUagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.