miRNA display CGI


Results 81 - 92 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25920 5' -54.4 NC_005337.1 + 42493 0.7 0.814501
Target:  5'- aCgCGCGAgcuCCUgaagCUgCGGACGUCCa -3'
miRNA:   3'- gGgGCGCUacuGGAa---GA-GCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 124170 0.7 0.814501
Target:  5'- -aCCGCG-UGACCUUCgUGGACcUCg -3'
miRNA:   3'- ggGGCGCuACUGGAAGaGCCUGuAGg -5'
25920 5' -54.4 NC_005337.1 + 112633 0.68 0.878069
Target:  5'- gCCCCaGCGAgaagauggaGACCUUCUgcUGGAacUCCg -3'
miRNA:   3'- -GGGG-CGCUa--------CUGGAAGA--GCCUguAGG- -5'
25920 5' -54.4 NC_005337.1 + 98732 0.68 0.878069
Target:  5'- gCCCUGCGcgugcUGACCgUCaUGGACuUCCu -3'
miRNA:   3'- -GGGGCGCu----ACUGGaAGaGCCUGuAGG- -5'
25920 5' -54.4 NC_005337.1 + 30107 0.68 0.878069
Target:  5'- gCgCGCGcaccuUGACCUUgUCGGugAggUCCg -3'
miRNA:   3'- gGgGCGCu----ACUGGAAgAGCCugU--AGG- -5'
25920 5' -54.4 NC_005337.1 + 77815 0.68 0.877354
Target:  5'- gCCCGUa--GACCUuggUCUCGGccaccgcGCGUCCa -3'
miRNA:   3'- gGGGCGcuaCUGGA---AGAGCC-------UGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 3260 0.69 0.863372
Target:  5'- aCUCUGUGGaGGCgUcgaUCUCGGACAUgCCg -3'
miRNA:   3'- -GGGGCGCUaCUGgA---AGAGCCUGUA-GG- -5'
25920 5' -54.4 NC_005337.1 + 131579 0.69 0.855709
Target:  5'- cCUCCGCGuccccacGCCgcagCUcCGGACGUCCu -3'
miRNA:   3'- -GGGGCGCuac----UGGaa--GA-GCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 127241 0.69 0.847844
Target:  5'- gCCCCGaCGugcucGGCCUgaugCUggaggcgggcgCGGACGUCCg -3'
miRNA:   3'- -GGGGC-GCua---CUGGAa---GA-----------GCCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 125093 0.69 0.839783
Target:  5'- aCCgCGUGGccaagcaccUGACCggggUCUCcGGCAUCCa -3'
miRNA:   3'- -GGgGCGCU---------ACUGGa---AGAGcCUGUAGG- -5'
25920 5' -54.4 NC_005337.1 + 84663 0.7 0.831535
Target:  5'- gUCCGCG-UGAUCUggUCgUCGGACGgggCCg -3'
miRNA:   3'- gGGGCGCuACUGGA--AG-AGCCUGUa--GG- -5'
25920 5' -54.4 NC_005337.1 + 36716 0.77 0.43433
Target:  5'- cCUCCGCGAgGAUCUUCUCGGugAa-- -3'
miRNA:   3'- -GGGGCGCUaCUGGAAGAGCCugUagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.